Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   FDV79_RS14020 Genome accession   NZ_CP040103
Coordinates   2952988..2953449 (+) Length   153 a.a.
NCBI ID   WP_025541878.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain LVP66     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2947988..2958449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDV79_RS14005 (FDV79_15020) pdhR 2950020..2950787 (-) 768 WP_005462576.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -
  FDV79_RS14010 (FDV79_15025) ampD 2951193..2951744 (-) 552 WP_140380320.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  FDV79_RS14015 (FDV79_15030) nadC 2951837..2952724 (+) 888 WP_015297249.1 carboxylating nicotinate-nucleotide diphosphorylase -
  FDV79_RS14020 (FDV79_15035) pilA 2952988..2953449 (+) 462 WP_025541878.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  FDV79_RS14025 (FDV79_15040) pilB 2953449..2955134 (+) 1686 WP_025541880.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FDV79_RS14030 (FDV79_15045) pilC 2955158..2956381 (+) 1224 WP_140380223.1 type II secretion system F family protein Machinery gene
  FDV79_RS14035 (FDV79_15050) pilD 2956446..2957315 (+) 870 WP_015297252.1 A24 family peptidase Machinery gene
  FDV79_RS14040 (FDV79_15055) coaE 2957316..2957930 (+) 615 WP_025523092.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 15698.90 Da        Isoelectric Point: 6.4347

>NTDB_id=319909 FDV79_RS14020 WP_025541878.1 2952988..2953449(+) (pilA) [Vibrio parahaemolyticus strain LVP66]
MKHSKQKKQQGFTLIELMIVVAIIGILAAFAVPAYQNYTMRAHASEMLSASSAFKTAASICLLDGEVNCTSGNGGVPTDQ
QFAKNATDDFTVSSTIEQAALGTATGAVTATVAAKGALAPNSTVVLTPTITGAGVTWAVTCTGLGNADWCPER

Nucleotide


Download         Length: 462 bp        

>NTDB_id=319909 FDV79_RS14020 WP_025541878.1 2952988..2953449(+) (pilA) [Vibrio parahaemolyticus strain LVP66]
ATGAAACACAGTAAACAGAAAAAACAACAAGGTTTTACCTTGATTGAATTGATGATTGTCGTGGCGATTATCGGTATTTT
GGCTGCATTTGCAGTACCAGCATATCAAAACTACACAATGAGAGCGCATGCAAGTGAAATGTTAAGTGCTTCTTCCGCTT
TTAAAACTGCAGCTAGCATTTGCTTACTTGACGGAGAAGTAAACTGTACTTCTGGAAACGGAGGTGTACCTACGGACCAA
CAATTTGCCAAAAATGCGACTGATGATTTTACTGTGTCATCAACTATTGAACAAGCAGCTTTAGGAACAGCCACTGGCGC
TGTAACTGCAACTGTTGCCGCTAAAGGGGCTCTTGCACCTAACTCTACTGTTGTACTAACTCCGACTATTACAGGTGCAG
GTGTCACATGGGCGGTGACATGTACAGGTCTAGGTAATGCTGACTGGTGTCCTGAACGCTAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(41-139)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Vibrio campbellii strain DS40M4

41.463

100

0.444
  pilA Haemophilus influenzae 86-028NP

40.909

100

0.412
  pilA2 Legionella pneumophila str. Paris

44.928

90.196

0.405
  pilA2 Legionella pneumophila strain ERS1305867

43.796

89.542

0.392
  pilA Haemophilus influenzae Rd KW20

39.735

98.693

0.392
  comP Acinetobacter baylyi ADP1

38.667

98.039

0.379