Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FDV79_RS01040 Genome accession   NZ_CP040103
Coordinates   216821..218344 (-) Length   507 a.a.
NCBI ID   WP_140381067.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain LVP66     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 211821..223344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDV79_RS01020 (FDV79_01135) - 213101..214087 (+) 987 WP_020904430.1 serine/threonine protein kinase -
  FDV79_RS01025 (FDV79_01140) - 214122..214724 (+) 603 WP_005454748.1 thiol:disulfide interchange protein DsbA/DsbL -
  FDV79_RS01030 (FDV79_01145) - 214767..215645 (-) 879 WP_031823383.1 acyltransferase -
  FDV79_RS01035 (FDV79_01150) - 215808..216764 (+) 957 WP_025525057.1 DUF2860 domain-containing protein -
  FDV79_RS01040 (FDV79_01155) comM 216821..218344 (-) 1524 WP_140381067.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FDV79_RS01045 (FDV79_01160) ilvG 218809..220455 (+) 1647 WP_005461385.1 acetolactate synthase 2 catalytic subunit -
  FDV79_RS01050 (FDV79_01165) ilvM 220466..220750 (+) 285 WP_005378958.1 acetolactate synthase 2 small subunit -
  FDV79_RS01055 (FDV79_01170) ilvE 220763..221701 (+) 939 WP_015297538.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55020.09 Da        Isoelectric Point: 8.4861

>NTDB_id=319851 FDV79_RS01040 WP_140381067.1 216821..218344(-) (comM) [Vibrio parahaemolyticus strain LVP66]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDRLKNYEFVGELALSGGLRPVKGVLPAALAASKVGRHLVVPHVNGDQAALVGKEQHKSAQSL
LEVCAELCGQHRLNLYQTPKRKTVEKHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASVASLTQSEINEHNWKSRPFRAPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSLEIPSLPKGTLAEGGDR
GEPTELVKERVSLARESMLNRNGKVNALLGSREIEAFCPLQKSDAEFLETALHRLGLSIRAYHRIIKVARTIADLEGAEQ
IERSHLAEALGYRVMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=319851 FDV79_RS01040 WP_140381067.1 216821..218344(-) (comM) [Vibrio parahaemolyticus strain LVP66]
ATGGGGCTGGCAATCATTCATAGTCGGGCAAGTGTCGGGGTGCAAGCACCGTCAGTTAGTGTGGAAGTGCATATCAGTAA
TGGCATGCCCGGCTTTACTCTCGTTGGGTTGCCGGAGACTACGGTAAAGGAATCCAAAGATCGTGTACGCAGTGCGATCA
TCAATTCAAATTTCCAGTTTCCAGCCAAGCGCATTACGGTCAATTTGGCCCCGGCAGATTTACCTAAAGAAGGCGGTCGT
TTTGATTTGCCTATCGCATTGGGTATTTTGGCGGCTTCAGAGCAAATCGCGACAGATAGGCTCAAAAACTACGAATTTGT
TGGCGAATTAGCCCTGTCTGGAGGATTAAGACCTGTCAAAGGTGTGCTTCCTGCCGCGTTGGCTGCAAGCAAAGTAGGAC
GTCATTTGGTGGTGCCTCATGTCAATGGCGATCAAGCAGCGTTGGTGGGCAAAGAGCAACATAAGTCAGCGCAATCCTTA
CTTGAGGTGTGTGCGGAGTTATGTGGTCAGCATCGTCTCAATCTTTATCAAACTCCGAAGCGAAAAACGGTTGAAAAACA
TGGTCGAGATCTACAAGACATCATTGGCCAGCAACAAGGCAAGCGTGCTCTAGAAATTGCGGCGGCTGGAAACCACAACC
TACTTTTCCTTGGTCCTCCTGGTACAGGAAAAACCATGCTGGCATCGCGTTTATGCGACTTACTGCCGGAGATGAGCGAC
GAAGAAGCGATGGAAACGGCTTCAGTCGCGTCACTGACGCAAAGTGAGATTAATGAGCACAACTGGAAGTCGCGTCCGTT
TCGTGCGCCGCACCATTCCAGTTCGATGGCGGCATTAGTTGGTGGTGGCTCGGTGCCAAGACCAGGTGAGATTTCTTTGG
CTCACAATGGGTTATTGTTCCTTGATGAAATGCCGGAGTTTGACCGTAAAGTGTTGGACTCGTTACGAGAACCACTGGAA
TCGGGTGAGATCATCATTTCGCGCGCACAAGGAAAAACACGTTTTCCTGCTCGTTTTCAGCTGGTGGGCGCGTTGAATCC
AAGCCCAACTGGCTATTACGAAGGGAATCAAGCTCGCACTAACCCTCAAGCTATTTTGCGTTACTTAGGCCGTTTATCGG
GACCGCTTCTCGACCGTTTTGATATGTCGTTAGAAATTCCATCCTTACCAAAAGGCACGTTGGCGGAAGGTGGTGATCGA
GGTGAACCCACGGAACTCGTCAAAGAGCGCGTCAGTCTTGCTCGCGAGAGCATGCTCAATCGAAACGGCAAAGTCAACGC
ACTGCTCGGCAGCCGTGAGATTGAGGCATTTTGCCCGTTGCAAAAAAGCGATGCGGAATTTCTCGAAACTGCACTCCATC
GGCTGGGATTATCGATTCGTGCCTATCATCGCATCATTAAAGTGGCCCGCACGATAGCGGATTTAGAAGGTGCTGAGCAG
ATTGAACGTTCTCATTTAGCGGAAGCGCTCGGGTATCGCGTGATGGACCGATTGCTGAAACAACTCACGGCTCAAGCCGT
GTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

94.083

100

0.941
  comM Vibrio cholerae O1 biovar El Tor strain E7946

84.615

100

0.846
  comM Vibrio cholerae strain A1552

84.615

100

0.846
  comM Haemophilus influenzae Rd KW20

66.075

100

0.661
  comM Glaesserella parasuis strain SC1401

64.118

100

0.645
  comM Legionella pneumophila str. Paris

49.798

97.83

0.487
  comM Legionella pneumophila strain ERS1305867

49.798

97.83

0.487
  comM Acinetobacter baylyi ADP1

49.598

98.225

0.487
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.094

100

0.442