Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | D3Y57_RS10485 | Genome accession | NZ_CP032829 |
| Coordinates | 1012387..1012899 (-) | Length | 170 a.a. |
| NCBI ID | WP_121152936.1 | Uniprot ID | A0A494TG94 |
| Organism | Sphingomonas paeninsulae strain YZ-8 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1007387..1017899
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D3Y57_RS10460 (D3Y57_10460) | - | 1007638..1007889 (-) | 252 | WP_121152932.1 | DUF6356 family protein | - |
| D3Y57_RS10465 (D3Y57_10465) | - | 1007886..1009169 (-) | 1284 | WP_121152933.1 | dicarboxylate/amino acid:cation symporter | - |
| D3Y57_RS10470 (D3Y57_10470) | - | 1009193..1010557 (-) | 1365 | WP_277873347.1 | Mur ligase family protein | - |
| D3Y57_RS10475 (D3Y57_10475) | - | 1010632..1011456 (+) | 825 | WP_121152935.1 | LD-carboxypeptidase | - |
| D3Y57_RS10480 (D3Y57_10480) | - | 1011453..1012379 (-) | 927 | WP_239026067.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| D3Y57_RS10485 (D3Y57_10485) | ssb | 1012387..1012899 (-) | 513 | WP_121152936.1 | single-stranded DNA-binding protein | Machinery gene |
| D3Y57_RS10490 (D3Y57_10490) | - | 1012909..1014804 (-) | 1896 | WP_239026027.1 | ferrous iron transporter B | - |
| D3Y57_RS10495 (D3Y57_10495) | - | 1014815..1015057 (-) | 243 | WP_121152937.1 | FeoA family protein | - |
| D3Y57_RS10500 (D3Y57_10500) | - | 1015160..1017031 (+) | 1872 | WP_121155757.1 | CshA/CshB family fibrillar adhesin-related protein | - |
| D3Y57_RS10505 (D3Y57_10505) | - | 1017067..1017564 (-) | 498 | WP_121152938.1 | glycine zipper 2TM domain-containing protein | - |
Sequence
Protein
Download Length: 170 a.a. Molecular weight: 18193.83 Da Isoelectric Point: 5.3476
>NTDB_id=319023 D3Y57_RS10485 WP_121152936.1 1012387..1012899(-) (ssb) [Sphingomonas paeninsulae strain YZ-8]
MAGSVNKVILVGNLGKDPESRSFANGGKVVSFTLATSENWNDKASGEKREKTEWHNVQIFNENIARTAEQYLKKGSKVYV
EGKLQTRKWQDQSGNDKYTTEVVLERFNGTLVMLGERGERGGSSGGGGGDWNQDSAPRGNFGGGGARGGGTSGDGRPAAF
DSDLDDDVPF
MAGSVNKVILVGNLGKDPESRSFANGGKVVSFTLATSENWNDKASGEKREKTEWHNVQIFNENIARTAEQYLKKGSKVYV
EGKLQTRKWQDQSGNDKYTTEVVLERFNGTLVMLGERGERGGSSGGGGGDWNQDSAPRGNFGGGGARGGGTSGDGRPAAF
DSDLDDDVPF
Nucleotide
Download Length: 513 bp
>NTDB_id=319023 D3Y57_RS10485 WP_121152936.1 1012387..1012899(-) (ssb) [Sphingomonas paeninsulae strain YZ-8]
GTGGCTGGCAGCGTCAACAAAGTTATTCTCGTCGGCAATCTGGGCAAGGACCCAGAGTCGCGCAGCTTCGCAAACGGTGG
CAAGGTCGTGAGCTTCACGCTCGCCACGTCCGAAAACTGGAACGACAAGGCCAGCGGCGAAAAGCGTGAGAAGACCGAGT
GGCACAATGTCCAGATCTTCAACGAAAACATCGCTCGGACGGCCGAACAATATCTGAAAAAGGGTTCGAAAGTTTACGTC
GAAGGAAAGCTTCAGACGCGTAAGTGGCAGGATCAGTCGGGCAACGACAAATATACGACCGAGGTTGTGCTCGAACGCTT
CAACGGCACGCTGGTAATGCTCGGTGAACGCGGTGAGCGCGGCGGATCATCGGGCGGTGGCGGCGGCGACTGGAATCAGG
ACAGTGCGCCACGCGGCAATTTCGGTGGCGGTGGCGCCCGTGGCGGCGGAACCAGCGGCGATGGTCGTCCGGCGGCGTTC
GACAGCGATCTCGACGACGACGTCCCGTTCTGA
GTGGCTGGCAGCGTCAACAAAGTTATTCTCGTCGGCAATCTGGGCAAGGACCCAGAGTCGCGCAGCTTCGCAAACGGTGG
CAAGGTCGTGAGCTTCACGCTCGCCACGTCCGAAAACTGGAACGACAAGGCCAGCGGCGAAAAGCGTGAGAAGACCGAGT
GGCACAATGTCCAGATCTTCAACGAAAACATCGCTCGGACGGCCGAACAATATCTGAAAAAGGGTTCGAAAGTTTACGTC
GAAGGAAAGCTTCAGACGCGTAAGTGGCAGGATCAGTCGGGCAACGACAAATATACGACCGAGGTTGTGCTCGAACGCTT
CAACGGCACGCTGGTAATGCTCGGTGAACGCGGTGAGCGCGGCGGATCATCGGGCGGTGGCGGCGGCGACTGGAATCAGG
ACAGTGCGCCACGCGGCAATTTCGGTGGCGGTGGCGCCCGTGGCGGCGGAACCAGCGGCGATGGTCGTCCGGCGGCGTTC
GACAGCGATCTCGACGACGACGTCCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
47.059 |
100 |
0.518 |
| ssb | Vibrio cholerae strain A1552 |
47.977 |
100 |
0.488 |
| ssb | Neisseria meningitidis MC58 |
37.989 |
100 |
0.4 |
| ssb | Neisseria gonorrhoeae MS11 |
37.989 |
100 |
0.4 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
36.364 |
100 |
0.376 |