Detailed information NTG0318501

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: CFBP5877_RS14450
• Genome accession: NZ_CP039897
• Coordinates: 2864967..2866499 (+)
• Length: 510 a.a.
• NCBI ID: WP_080826758.1
• Uniprot ID: -
• Organism: Agrobacterium tumefaciens strain CFBP5877
• Function: promote branch migration (predicted from homology) Homologous recombination

Genomic Context

Location: 2859967..2871499

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CFBP5877_RS14425 (CFBP5877_14425)	-	2860024..2860992 (+)	969	WP_175416747.1	ABC transporter permease subunit	-
CFBP5877_RS14430 (CFBP5877_14430)	ugpE	2861004..2861846 (+)	843	WP_080826762.1	sn-glycerol-3-phosphate ABC transporter permease UgpE	-
CFBP5877_RS14435 (CFBP5877_14435)	-	2861857..2862957 (+)	1101	WP_080826761.1	sn-glycerol-3-phosphate import ATP-binding protein UgpC	-
CFBP5877_RS14440 (CFBP5877_14440)	-	2863067..2863579 (+)	513	WP_080826760.1	cupin domain-containing protein	-
CFBP5877_RS14445 (CFBP5877_14445)	gshB	2863824..2864783 (+)	960	WP_080826759.1	glutathione synthase	-
CFBP5877_RS14450 (CFBP5877_14450)	comM	2864967..2866499 (+)	1533	WP_080826758.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
CFBP5877_RS14455 (CFBP5877_14455)	cysK	2866612..2867580 (-)	969	WP_080826757.1	cysteine synthase A	-
CFBP5877_RS14460 (CFBP5877_14460)	-	2867722..2868339 (-)	618	WP_080826756.1	LysE family translocator	-
CFBP5877_RS14465 (CFBP5877_14465)	dut	2868418..2868888 (-)	471	WP_080826755.1	dUTP diphosphatase	-
CFBP5877_RS14470 (CFBP5877_14470)	-	2868978..2870561 (+)	1584	WP_080826754.1	peptide chain release factor 3	-

Sequence

Protein

• Length: 510 a.a.
• Molecular weight: 53241.59 Da
• Isoelectric Point: 8.5935

>NTDB_id=318501 CFBP5877_RS14450 WP_080826758.1 2864967..2866499(+) (comM) [Agrobacterium tumefaciens strain CFBP5877]
MVARVNTVAFQGIEGVPVEVQVMVAPGKIGIQIVGLPDKAVAESRERVQAALHASGLALPAKKVTVNLAPADLPKEGSHF
DLPIALGLMAALGAIPAEALSQYVVLGELNLDGTIGMVSGALPAAIGANALGKGLICPAESGPEAAWAGAGIDILAPRSL
IALANHFRGTQLLSRPSPAIRANPVNLPDLSDIKGQESARRALEVAAAGGHNLLMVGPPGSGKSMLASRLPSILPPLGVA
ELLEVSMVHSIAGQLSGGKLSDRRPFRTPHHSATMAALIGGGLRARPGEASLAHHGVLFLDEFPEFSPQVLDALRQPLET
GECIIARANHRVSYPAEIQLVAAMNPCRCGMAGEPGFTCARGTRCVTDYQARISGPLLDRIDIRIDVPAVSATDLIRPVV
SEPSAVVAARVAQARLAQQERYAAAGFPSLRTNARCTTALIEKYAEPDASGLQLLRDAAERLKFSARGYHRILKVARTLA
DLDGKQTVGRIHVAEAVSYRIAGERLTAAA

Nucleotide

• Length: 1533 bp

>NTDB_id=318501 CFBP5877_RS14450 WP_080826758.1 2864967..2866499(+) (comM) [Agrobacterium tumefaciens strain CFBP5877]
ATGGTGGCACGGGTCAATACGGTCGCATTTCAGGGCATAGAGGGCGTGCCCGTTGAGGTGCAGGTCATGGTCGCGCCCGG
AAAGATCGGCATCCAGATTGTCGGCCTGCCGGACAAGGCGGTGGCTGAAAGCCGCGAGCGCGTGCAGGCCGCCCTGCATG
CCTCGGGTCTGGCCTTGCCGGCTAAAAAAGTCACCGTCAATCTGGCTCCTGCCGATCTGCCCAAGGAAGGATCGCATTTC
GATCTTCCCATTGCTCTTGGTCTCATGGCTGCTCTGGGCGCCATACCGGCGGAAGCGCTCAGCCAATATGTGGTTCTCGG
CGAACTCAATCTCGATGGTACGATCGGCATGGTTTCGGGTGCGCTGCCGGCGGCCATCGGCGCCAATGCGCTTGGCAAGG
GCTTGATCTGCCCGGCTGAAAGCGGGCCCGAAGCTGCCTGGGCCGGCGCCGGCATCGATATTCTCGCGCCGCGCAGCCTC
ATTGCGCTCGCCAATCATTTTCGCGGCACCCAGCTTCTGTCACGCCCCTCACCCGCCATCCGCGCCAATCCGGTCAATCT
GCCGGATCTGTCCGATATCAAGGGACAGGAAAGCGCGCGGCGCGCTTTGGAGGTAGCGGCTGCCGGGGGCCATAATCTGC
TGATGGTCGGGCCGCCCGGTTCGGGCAAGTCCATGCTCGCCTCCCGCTTGCCTTCCATCCTGCCGCCGCTGGGGGTGGCG
GAACTGCTGGAAGTGTCGATGGTGCATTCCATCGCCGGCCAATTATCGGGCGGTAAGCTCTCGGACCGCAGACCGTTCCG
CACGCCGCACCATTCCGCCACCATGGCGGCGCTGATCGGCGGTGGGTTGCGCGCCAGACCGGGTGAGGCCTCGCTTGCCC
ATCACGGCGTCCTGTTTCTGGATGAATTCCCGGAATTTTCGCCGCAGGTGCTGGATGCGCTGCGCCAGCCGCTGGAAACC
GGCGAATGTATCATCGCAAGGGCCAATCATCGCGTCAGCTATCCCGCAGAAATCCAACTTGTTGCGGCCATGAACCCTTG
CCGCTGTGGCATGGCAGGAGAGCCGGGCTTCACCTGTGCCAGAGGTACGCGTTGTGTGACTGATTATCAGGCCCGCATTT
CCGGTCCGCTGCTGGATCGCATCGATATTCGCATCGACGTTCCCGCCGTTTCCGCTACCGATCTCATCCGACCCGTCGTA
TCCGAGCCGAGTGCAGTGGTTGCCGCCCGTGTCGCCCAGGCGCGACTTGCGCAGCAGGAGCGCTATGCGGCGGCGGGGTT
CCCGTCCCTCCGCACCAATGCCCGCTGCACAACGGCGCTTATCGAAAAATATGCCGAACCGGATGCATCCGGGCTGCAAT
TGCTGCGCGACGCCGCCGAGCGGCTGAAGTTTTCCGCACGCGGTTATCATCGCATTCTCAAGGTTGCCCGCACGCTCGCC
GATCTGGACGGCAAGCAGACGGTTGGCCGTATTCATGTGGCGGAAGCCGTGTCCTACCGGATCGCGGGGGAAAGGTTGAC
GGCCGCGGCCTAG

Domains

Predicted by InterProScan.

• Subunit ChlI of Mg-chelatase (ChlI) (20-140)

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (189-394)

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (402-500)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Acinetobacter baylyi ADP1	45.8	98.039	0.449
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	44.597	99.804	0.445
comM	Vibrio cholerae O1 biovar El Tor strain E7946	45.02	98.431	0.443
comM	Vibrio cholerae strain A1552	45.02	98.431	0.443
comM	Vibrio campbellii strain DS40M4	43.912	98.235	0.431
comM	Haemophilus influenzae Rd KW20	42.772	99.02	0.424
comM	Glaesserella parasuis strain SC1401	42.715	98.235	0.42
comM	Legionella pneumophila str. Paris	40.755	98.627	0.402
comM	Legionella pneumophila strain ERS1305867	40.755	98.627	0.402