Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   D6869_RS09455 Genome accession   NZ_CP032526
Coordinates   1888521..1890326 (-) Length   601 a.a.
NCBI ID   WP_014735112.1    Uniprot ID   -
Organism   Lactococcus cremoris strain 4B0     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1883521..1895326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D6869_RS09440 (D6869_09560) alaS 1883873..1886491 (-) 2619 WP_011835657.1 alanine--tRNA ligase -
  D6869_RS09445 (D6869_09565) - 1886754..1887680 (-) 927 WP_011835658.1 peptidyl-prolyl cis-trans isomerase -
  D6869_RS09450 (D6869_09570) - 1887826..1888518 (-) 693 WP_011835659.1 O-methyltransferase -
  D6869_RS09455 (D6869_09575) pepF 1888521..1890326 (-) 1806 WP_014735112.1 oligoendopeptidase F Regulator
  D6869_RS09460 (D6869_09580) - 1890401..1891384 (-) 984 Protein_1859 competence protein CoiA family protein -
  D6869_RS09465 (D6869_09585) - 1891459..1892544 (-) 1086 WP_014735114.1 YdcF family protein -
  D6869_RS09470 (D6869_09590) - 1892697..1893545 (-) 849 WP_011835662.1 alpha/beta hydrolase -
  D6869_RS09475 (D6869_09595) - 1893754..1895175 (-) 1422 WP_011676727.1 NCS2 family permease -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 70054.80 Da        Isoelectric Point: 4.9213

>NTDB_id=316719 D6869_RS09455 WP_014735112.1 1888521..1890326(-) (pepF) [Lactococcus cremoris strain 4B0]
MVKNRNEIPEALTWDLTTIFSTDQKWETELEKVKKELSLVETNDKGHLLDSAETLLTITKNMLSISQKVEKLYVYASMKN
DQDTREAKYQEYQSKATALYVNFGESYAFYEPEFLKITKETYEKWLETLQELKNYDHMFERLFAKKEHILSQKEEKILAA
AGEIFESPSETFEIFDNADVKFPFVKNELGEKIQLTHGNYSSLMESKNREVRKAAYEALYSNYEQYQHTYAKTLQTNVKV
HNFNAQIRAYDSARQAALMSNFVPEKVYDVLIEGIHQHLPLLHRYIELRKKILEISDFKMYDIYTPLSNLDYKFNYTEGV
KKAQEVLAIFGEEYSQKVKAAFDERWIDVEENVGKRSGAYSGGSYDTKAFMLLNWQGTLDDLFTLVHEMGHSIHSTFTRE
NQPYVYGDYPIFLAEIASTTNENILTETLLKESNDEKERFALLNHWLDSFRGTVFRQSQFAEFEQKIHEVDAEGEVLTSE
FLNSLYGELNEKYYGLSAKENPEIQFEWAKIPHFYYNFYVFQYATGFAAASFIAEKVVHGSVTDRQNYLDYLKAGSSAYP
LDVIAKAGVNMESTDYLESAFKLFEKRLNELEKLVEKGVHL

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=316719 D6869_RS09455 WP_014735112.1 1888521..1890326(-) (pepF) [Lactococcus cremoris strain 4B0]
ATGGTAAAAAATAGAAATGAAATCCCTGAAGCCTTGACTTGGGATTTGACAACAATTTTTTCAACAGATCAAAAATGGGA
AACAGAATTAGAGAAGGTAAAAAAAGAGCTTTCACTTGTTGAGACAAATGATAAAGGTCATTTACTTGATTCAGCAGAAA
CTTTACTGACAATTACTAAAAATATGCTATCAATTTCTCAAAAAGTTGAAAAGCTTTATGTTTATGCTTCAATGAAAAAT
GATCAAGATACAAGAGAAGCAAAGTATCAAGAATATCAATCAAAAGCAACGGCCCTCTATGTTAATTTTGGGGAAAGCTA
TGCCTTTTATGAACCTGAATTTTTAAAAATTACAAAAGAAACCTACGAAAAATGGTTAGAAACCCTTCAGGAATTGAAAA
ATTACGATCACATGTTTGAACGTTTATTTGCTAAAAAAGAACATATCCTTAGTCAAAAAGAAGAAAAAATATTGGCGGCA
GCGGGTGAAATCTTTGAAAGTCCTTCGGAGACTTTTGAAATTTTCGATAATGCAGATGTTAAATTTCCTTTTGTTAAAAA
TGAATTGGGTGAAAAGATTCAGTTGACACATGGAAATTATAGCTCTCTTATGGAAAGTAAAAACAGGGAAGTAAGAAAAG
CGGCTTATGAAGCACTTTACAGCAATTATGAACAATATCAACATACCTATGCAAAAACTTTGCAGACCAATGTAAAAGTT
CATAATTTCAATGCCCAAATACGCGCATATGACTCAGCACGTCAGGCAGCTTTGATGAGTAATTTTGTTCCAGAAAAAGT
TTATGACGTCTTGATAGAAGGCATTCATCAACACTTACCACTTTTACATCGCTATATTGAATTACGTAAGAAAATCTTAG
AAATTTCTGATTTCAAAATGTATGATATCTATACTCCATTATCTAATTTAGATTATAAATTCAATTACACTGAAGGAGTT
AAGAAAGCGCAAGAAGTGCTTGCAATTTTTGGTGAAGAGTATAGTCAGAAAGTTAAAGCGGCTTTTGATGAACGTTGGAT
TGATGTTGAAGAAAATGTCGGGAAACGGTCAGGGGCATACTCAGGTGGTTCTTATGATACCAAGGCATTCATGTTACTCA
ATTGGCAAGGAACATTGGACGATCTTTTTACATTGGTTCATGAGATGGGGCATTCTATTCACAGCACTTTTACGAGGGAA
AATCAGCCTTATGTTTATGGGGATTACCCAATCTTCTTAGCAGAGATTGCTTCAACTACCAATGAAAATATTTTAACTGA
GACTTTGCTCAAAGAAAGTAATGATGAAAAGGAACGTTTTGCTCTTTTAAACCATTGGTTAGATAGTTTTCGAGGAACCG
TATTTCGTCAAAGTCAATTTGCTGAATTTGAACAAAAAATTCACGAAGTCGATGCTGAAGGTGAAGTGTTGACGAGCGAA
TTTTTGAATTCTCTTTATGGCGAACTTAATGAAAAATATTATGGCTTATCTGCCAAAGAAAACCCTGAAATTCAGTTTGA
ATGGGCAAAAATTCCTCATTTCTATTATAATTTTTACGTTTTTCAATATGCAACTGGCTTTGCCGCAGCCTCATTTATAG
CTGAAAAAGTGGTGCATGGTTCGGTTACTGACCGTCAAAATTATCTTGATTATTTAAAAGCTGGTTCGTCAGCCTACCCA
CTAGACGTGATTGCAAAAGCTGGAGTCAATATGGAATCTACAGATTACTTAGAGTCTGCTTTTAAGCTTTTTGAAAAACG
TTTGAATGAATTAGAAAAATTAGTTGAAAAAGGAGTCCATCTTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(113-182)

Peptidase family M3 (Peptidase_M3)

(203-582)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

63.561

100

0.636

Multiple sequence alignment