Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   E5Q08_RS08325 Genome accession   NZ_CP038987
Coordinates   1678832..1680331 (+) Length   499 a.a.
NCBI ID   WP_027479895.1    Uniprot ID   -
Organism   Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939 substr. R2     
Function   promote branch migration (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1673832..1685331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5Q08_RS08305 tnpA 1674935..1675357 (-) 423 WP_010887312.1 IS200/IS605-like element ISDra2 family transposase -
  E5Q08_RS08310 - 1675418..1677025 (+) 1608 WP_010888288.1 TRAP transporter permease -
  E5Q08_RS08315 - 1677141..1677680 (+) 540 WP_227085933.1 hypothetical protein -
  E5Q08_RS08320 - 1677783..1678757 (+) 975 WP_027479894.1 ABC transporter substrate-binding protein -
  E5Q08_RS08325 comM 1678832..1680331 (+) 1500 WP_027479895.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  E5Q08_RS08330 - 1680405..1681367 (+) 963 WP_028328022.1 hypothetical protein -
  E5Q08_RS08335 - 1681484..1682539 (+) 1056 WP_028328021.1 hypothetical protein -
  E5Q08_RS08340 - 1682581..1684638 (-) 2058 WP_010888294.1 M3 family metallopeptidase -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 52745.45 Da        Isoelectric Point: 6.7274

>NTDB_id=316615 E5Q08_RS08325 WP_027479895.1 1678832..1680331(+) (comM) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939 substr. R2]
MLARARSVALIGVDAVPVEVEVDVSPGLPAFTVVGLPDQAVSEARERVRAAVRNSGLPFPAARITVNLAPADLRKEGPLY
DLPIALGLLAAQELLPQEALEETIVAGELALDGSLRPIAGAVNLALLAAGHDLEALLPAGNAQEAALIEDVSVFGAATLR
EAVAHLSGAARLPLTQPETPEDDAALFPDLGDLKGQTAARRALEVALAGGHNLLMVGSPGSGKTMLARRAPGLLPPLTRA
EALEVTRIHSAAGLLTSRGKFSRHAPFRAPHHTVSDAGLIGGGSIPKPGEVSLAHRGLLFLDEFPEFSRKALETLRQPLE
DGRVTISRARATVEYPARFQLLAAMNPCPCGHYGDPEKPCTCTPNERTRYAARLSGPLLDRLDLIVKVPRLTVDELTRAP
EPETSAPVRERIAAARERMLARQGGRNSDLAGQALREHAPLAAGPLAFAQAAARQLGLTGRGYDRVLRVARTVADLAGSD
EIREAHLAEAVTYRPRELA

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=316615 E5Q08_RS08325 WP_027479895.1 1678832..1680331(+) (comM) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939 substr. R2]
ATGCTCGCCCGCGCCCGCAGTGTGGCCCTGATCGGCGTGGACGCCGTGCCGGTGGAAGTCGAGGTGGACGTGTCGCCGGG
GCTGCCGGCGTTTACAGTGGTCGGCTTGCCCGATCAGGCCGTCAGCGAGGCACGCGAACGGGTGCGGGCCGCCGTGCGGA
ACTCGGGACTGCCTTTTCCAGCGGCTAGAATTACGGTGAACCTCGCGCCCGCCGACTTGCGCAAAGAAGGCCCGCTGTAC
GACCTACCGATTGCGCTGGGGTTGCTCGCCGCGCAGGAACTGCTGCCGCAGGAAGCGCTGGAAGAAACGATTGTGGCCGG
GGAACTCGCGCTGGACGGCAGCCTCCGACCCATCGCGGGAGCAGTCAATCTGGCGCTGCTGGCGGCGGGGCATGACCTCG
AAGCCCTGCTGCCGGCGGGCAATGCGCAGGAGGCGGCACTCATCGAGGACGTGAGCGTGTTCGGCGCGGCCACCCTGCGC
GAGGCGGTGGCGCATCTCAGCGGGGCGGCGCGGCTGCCGCTGACGCAGCCCGAAACGCCCGAGGACGACGCGGCGCTTTT
TCCTGACCTCGGCGACCTCAAGGGCCAGACGGCGGCGCGGCGGGCGCTCGAAGTCGCGCTGGCGGGCGGGCACAACCTGC
TCATGGTCGGCTCGCCCGGCTCCGGCAAGACCATGCTGGCGCGGCGGGCTCCGGGCCTATTACCTCCGCTGACCCGTGCC
GAGGCGTTGGAAGTCACCCGGATTCACTCGGCGGCGGGGCTGCTGACCAGCCGGGGCAAGTTCAGCCGCCACGCGCCGTT
CCGGGCGCCGCACCACACGGTGTCGGACGCGGGGCTAATCGGCGGGGGCAGCATTCCCAAGCCGGGGGAAGTGTCGCTGG
CTCACCGGGGCCTGCTCTTTCTCGACGAGTTTCCCGAATTTTCGCGCAAGGCGCTGGAGACGCTGCGGCAGCCGCTGGAA
GATGGCCGGGTGACCATCAGCCGGGCGCGGGCGACGGTGGAGTATCCCGCCCGTTTTCAACTGCTGGCGGCCATGAACCC
GTGTCCCTGTGGGCACTACGGCGACCCGGAAAAGCCCTGCACCTGCACGCCGAACGAGAGAACCCGCTACGCCGCCCGGC
TGAGTGGCCCGCTGCTCGACCGCCTCGACCTGATCGTGAAGGTGCCCCGCCTGACGGTGGACGAGCTGACCCGCGCCCCG
GAGCCGGAGACCTCCGCGCCGGTGCGGGAGCGCATTGCCGCCGCGCGTGAGCGAATGCTGGCGCGGCAGGGGGGCCGCAA
CAGCGACCTCGCCGGGCAGGCGCTGCGCGAACATGCGCCGCTGGCCGCCGGGCCGCTCGCCTTCGCGCAGGCCGCCGCCC
GGCAACTGGGCCTCACCGGGCGCGGCTACGACCGGGTGCTGCGGGTGGCGCGCACGGTGGCCGACCTCGCGGGCAGTGAC
GAGATTCGGGAAGCACACCTTGCCGAAGCGGTGACGTACCGGCCACGGGAACTGGCGTAA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)

Subunit ChlI of Mg-chelatase (ChlI)

(20-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter baylyi ADP1

47.87

98.798

0.473
  comM Haemophilus influenzae Rd KW20

46.906

100

0.471
  comM Vibrio cholerae strain A1552

47.368

98.998

0.469
  comM Vibrio cholerae O1 biovar El Tor strain E7946

47.368

98.998

0.469
  comM Vibrio campbellii strain DS40M4

46.559

98.998

0.461
  comM Legionella pneumophila strain ERS1305867

45.219

100

0.455
  comM Legionella pneumophila str. Paris

45.219

100

0.455
  comM Glaesserella parasuis strain SC1401

45.2

100

0.453
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.841

100

0.453