Detailed information NTG0314090

Bioinformatically predicted

Overview

• Name: comEC
• Type: Machinery gene
• Locus tag: LL1196_RS09830
• Genome accession: NZ_CP032148
• Coordinates: 1903580..1904089 (-)
• Length: 169 a.a.
• NCBI ID: WP_021215847.1
• Uniprot ID: -
• Organism: Lactococcus cremoris strain 1196
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1898580..1909089

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LL1196_RS09795 (LL1196_1977)	-	1899019..1899546 (-)	528	WP_014572213.1	F0F1 ATP synthase subunit delta	-
LL1196_RS09800 (LL1196_1978)	atpF	1899548..1900054 (-)	507	WP_010906128.1	F0F1 ATP synthase subunit B	-
LL1196_RS09805 (LL1196_1979)	atpB	1900069..1900782 (-)	714	WP_004255255.1	F0F1 ATP synthase subunit A	-
LL1196_RS09810 (LL1196_1980)	-	1900829..1901044 (-)	216	WP_014572212.1	F0F1 ATP synthase subunit C	-
LL1196_RS09815 (LL1196_1981)	-	1901227..1902003 (-)	777	WP_014572211.1	alpha/beta hydrolase family protein	-
LL1196_RS09820 (LL1196_1982)	-	1902287..1902592 (-)	306	Protein_1912	ComEC/Rec2 family competence protein	-
LL1196_RS09825 (LL1196_1983)	-	1902613..1903503 (-)	891	WP_205536406.1	IS982-like element ISLll1 family transposase	-
LL1196_RS09830 (LL1196_1984)	comEC	1903580..1904089 (-)	510	WP_021215847.1	MBL fold metallo-hydrolase	Machinery gene
LL1196_RS09835 (LL1196_1985)	comEC	1904086..1905201 (-)	1116	WP_242521074.1	ComEC/Rec2 family competence protein	Machinery gene
LL1196_RS09840 (LL1196_1986)	-	1905485..1905898 (-)	414	Protein_1916	helix-hairpin-helix domain-containing protein	-
LL1196_RS09845 (LL1196_1987)	-	1905989..1906879 (+)	891	WP_309216250.1	IS982-like element IS982 family transposase	-
LL1196_RS09850 (LL1196_1988)	-	1907204..1908445 (-)	1242	WP_242521075.1	ABC transporter permease	-
LL1196_RS09855 (LL1196_03570)	-	1908432..1908566 (-)	135	WP_260341359.1	hypothetical protein	-

Sequence

Protein

• Length: 169 a.a.
• Molecular weight: 18953.71 Da
• Isoelectric Point: 6.9787

>NTDB_id=314090 LL1196_RS09830 WP_021215847.1 1903580..1904089(-) (comEC) [Lactococcus cremoris strain 1196]
MRASITAVDIGQGDSIFLQDKFNKENILIDTGGRLALPQKNWQKAQMQSNADKTLIPYLESMGVAHIDQLILTHTDADHV
GDFLSLADKIKIREIWISPGELTNISFVEKLKKAKIPIHVSKVGDKIPIFDSFLQVLSNGYTKKGDNNDSIVTYGNFYHT
KFLFTDPNC

Nucleotide

• Length: 510 bp

>NTDB_id=314090 LL1196_RS09830 WP_021215847.1 1903580..1904089(-) (comEC) [Lactococcus cremoris strain 1196]
ATGAGAGCAAGCATTACAGCAGTTGATATCGGACAAGGAGATAGTATTTTTCTACAAGATAAGTTTAATAAAGAAAACAT
TCTGATTGATACTGGGGGACGACTTGCTCTTCCTCAAAAAAATTGGCAAAAAGCGCAGATGCAATCAAATGCTGACAAAA
CGCTTATCCCTTATTTAGAATCCATGGGGGTGGCTCATATTGACCAACTTATTCTGACTCATACAGATGCTGACCATGTT
GGCGATTTCTTGTCCCTAGCTGATAAAATAAAAATAAGAGAAATCTGGATCAGTCCGGGAGAATTAACCAACATTAGTTT
TGTGGAAAAATTAAAAAAAGCAAAAATTCCGATTCATGTTAGTAAAGTTGGGGATAAAATTCCGATTTTTGATAGTTTTC
TTCAAGTTTTATCAAATGGTTACACTAAAAAAGGGGATAATAATGATTCCATAGTGACTTATGGAAACTTTTACCATACA
AAATTTCTTTTTACAGACCCGAATTGCTAG

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (11-99)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comEC	Lactococcus lactis subsp. cremoris KW2	98.182	97.633	0.959
comEC/celB	Streptococcus mitis SK321	46.108	98.817	0.456
comEC/celB	Streptococcus pneumoniae TIGR4	44.311	98.817	0.438
comEC/celB	Streptococcus pneumoniae Rx1	43.713	98.817	0.432
comEC/celB	Streptococcus pneumoniae D39	43.713	98.817	0.432
comEC/celB	Streptococcus pneumoniae R6	43.713	98.817	0.432
comEC/celB	Streptococcus mitis NCTC 12261	43.114	98.817	0.426
comEC	Latilactobacillus sakei subsp. sakei 23K	38.037	96.45	0.367