Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   LL1196_RS09835 Genome accession   NZ_CP032148
Coordinates   1904086..1905201 (-) Length   371 a.a.
NCBI ID   WP_242521074.1    Uniprot ID   A0A896TC14
Organism   Lactococcus cremoris strain 1196     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1899086..1910201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL1196_RS09800 (LL1196_1978) atpF 1899548..1900054 (-) 507 WP_010906128.1 F0F1 ATP synthase subunit B -
  LL1196_RS09805 (LL1196_1979) atpB 1900069..1900782 (-) 714 WP_004255255.1 F0F1 ATP synthase subunit A -
  LL1196_RS09810 (LL1196_1980) - 1900829..1901044 (-) 216 WP_014572212.1 F0F1 ATP synthase subunit C -
  LL1196_RS09815 (LL1196_1981) - 1901227..1902003 (-) 777 WP_014572211.1 alpha/beta hydrolase family protein -
  LL1196_RS09820 (LL1196_1982) - 1902287..1902592 (-) 306 Protein_1912 ComEC/Rec2 family competence protein -
  LL1196_RS09825 (LL1196_1983) - 1902613..1903503 (-) 891 WP_205536406.1 IS982-like element ISLll1 family transposase -
  LL1196_RS09830 (LL1196_1984) comEC 1903580..1904089 (-) 510 WP_021215847.1 MBL fold metallo-hydrolase Machinery gene
  LL1196_RS09835 (LL1196_1985) comEC 1904086..1905201 (-) 1116 WP_242521074.1 ComEC/Rec2 family competence protein Machinery gene
  LL1196_RS09840 (LL1196_1986) - 1905485..1905898 (-) 414 Protein_1916 helix-hairpin-helix domain-containing protein -
  LL1196_RS09845 (LL1196_1987) - 1905989..1906879 (+) 891 WP_309216250.1 IS982-like element IS982 family transposase -
  LL1196_RS09850 (LL1196_1988) - 1907204..1908445 (-) 1242 WP_242521075.1 ABC transporter permease -
  LL1196_RS09855 (LL1196_03570) - 1908432..1908566 (-) 135 WP_260341359.1 hypothetical protein -
  LL1196_RS09860 (LL1196_1989) - 1908563..1909495 (-) 933 WP_021215850.1 ABC transporter ATP-binding protein -
  LL1196_RS09865 (LL1196_1990) - 1909601..1909999 (-) 399 WP_011676775.1 hypothetical protein -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 43137.20 Da        Isoelectric Point: 9.8330

>NTDB_id=314091 LL1196_RS09835 WP_242521074.1 1904086..1905201(-) (comEC) [Lactococcus cremoris strain 1196]
MNGQKYQVYDTLKSLKEKGFYQNLSQNCQLSFTGNLEIPETQRNFNGFDDQKYLTSQNIYRQITIQQITNVEIKKNFDLH
TLRRKAIVWTQNHFPKPMSDYMTGLLFGFLSKDFNQMSDIYSSLGIIHLFALSGMQVNFFIDWFRKILLRMGLTRERVNL
VQIPFSIFYAFMTGLSVSVLRALFQKNIRLTSLDNIAVTTLVLMLISPKFLLTTGGQLTLFYAFVISMLNHPFSNLNGLK
KVLTESSVLSLCVLPLLIFDFHIFQPLSILLTIIFGFLFDFMLLPLLLCCFLISFLGFSLNLNYIFQILEWLVYKVDLPL
HYPFVLGKPSSLELIILFVLIGLFVDSFSHKKRRFFLIGFIFLFFSSLKIQ

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=314091 LL1196_RS09835 WP_242521074.1 1904086..1905201(-) (comEC) [Lactococcus cremoris strain 1196]
ATGAATGGACAAAAATATCAAGTCTATGACACATTGAAAAGTCTAAAAGAGAAAGGGTTTTATCAGAACTTAAGTCAAAA
TTGTCAGTTAAGTTTCACAGGAAACCTTGAAATACCAGAAACTCAGCGAAATTTTAATGGTTTTGATGACCAAAAATATT
TAACTAGTCAAAATATCTATCGACAGATTACCATCCAACAAATTACAAATGTGGAAATAAAAAAGAATTTTGACCTTCAT
ACTTTAAGGCGAAAGGCAATTGTTTGGACACAAAATCATTTTCCAAAACCGATGAGTGACTATATGACAGGTTTGCTTTT
TGGCTTTTTAAGTAAGGATTTTAATCAGATGAGCGATATTTACAGCTCTTTAGGAATTATTCATCTTTTTGCTCTATCAG
GAATGCAAGTAAATTTTTTTATTGATTGGTTTCGTAAAATACTTCTTCGCATGGGACTGACGAGAGAAAGAGTGAATCTT
GTTCAAATTCCATTTTCTATTTTTTATGCTTTTATGACGGGATTATCGGTTTCAGTTTTAAGAGCCCTTTTTCAAAAAAA
TATTCGTCTGACTTCTTTGGATAATATCGCAGTTACGACATTAGTTTTGATGCTCATAAGTCCAAAATTTTTACTGACGA
CTGGTGGTCAGCTTACCTTGTTTTATGCTTTTGTCATTTCGATGCTTAATCATCCTTTTTCTAATTTAAATGGATTGAAA
AAAGTGCTGACAGAATCATCAGTCCTTTCACTTTGTGTTCTTCCGTTACTCATCTTTGATTTCCATATTTTTCAGCCTCT
TTCAATATTATTAACAATTATATTTGGTTTTCTTTTTGATTTTATGTTGCTCCCGCTGCTTTTATGCTGTTTTCTTATAT
CATTTTTGGGATTTTCGCTCAATTTAAATTATATTTTTCAAATTCTAGAATGGCTAGTTTATAAAGTTGATTTACCCTTA
CATTACCCCTTTGTTTTGGGGAAACCTAGTTCACTCGAATTAATTATTCTATTTGTGTTAATTGGTTTATTCGTAGATTC
ATTTTCTCATAAAAAAAGGAGATTTTTTTTAATTGGATTTATATTTTTATTTTTTTCATCACTAAAAATCCAATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(105-345)

Domain of unknown function (DUF4131) (DUF4131)

(11-70)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Lactococcus lactis subsp. cremoris KW2

97.26

98.383

0.957
  comEC/celB Streptococcus mitis SK321

48.368

90.836

0.439
  comEC/celB Streptococcus mitis NCTC 12261

47.774

90.836

0.434
  comEC/celB Streptococcus pneumoniae TIGR4

47.774

90.836

0.434
  comEC/celB Streptococcus pneumoniae Rx1

47.181

90.836

0.429
  comEC/celB Streptococcus pneumoniae D39

47.181

90.836

0.429
  comEC/celB Streptococcus pneumoniae R6

47.181

90.836

0.429

Multiple sequence alignment