Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   D1115_RS10570 Genome accession   NZ_CP032093
Coordinates   2185756..2186070 (-) Length   104 a.a.
NCBI ID   WP_128811308.1    Uniprot ID   -
Organism   Vibrio alfacsensis strain CAIM 1831     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2180756..2191070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1115_RS10545 (D1115_10635) - 2181115..2182329 (+) 1215 WP_128811305.1 pyridoxal phosphate-dependent aminotransferase -
  D1115_RS10550 (D1115_10640) yfbR 2182443..2183025 (+) 583 Protein_1902 5'-deoxynucleotidase -
  D1115_RS10555 (D1115_10645) - 2183041..2184362 (+) 1322 Protein_1903 anti-phage deoxyguanosine triphosphatase -
  D1115_RS10560 (D1115_10650) - 2184444..2185061 (-) 618 WP_128811306.1 tRNA-uridine aminocarboxypropyltransferase -
  D1115_RS10565 (D1115_10655) rrtA 2185065..2185616 (+) 552 WP_128811307.1 rhombosortase -
  D1115_RS10570 (D1115_10660) comEA 2185756..2186070 (-) 315 WP_128811308.1 ComEA family DNA-binding protein Machinery gene
  D1115_RS10575 (D1115_10665) ppiD 2186260..2188119 (-) 1860 WP_128811309.1 peptidylprolyl isomerase -
  D1115_RS10580 (D1115_10670) - 2188355..2188627 (-) 273 WP_128811310.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 11195.71 Da        Isoelectric Point: 5.8294

>NTDB_id=313702 D1115_RS10570 WP_128811308.1 2185756..2186070(-) (comEA) [Vibrio alfacsensis strain CAIM 1831]
MKWILTISLMLLSSLAWATDSQTGSAETSSNKAAKYDGIEITVNVNTASAQEIASLLNGIGEKKAQDIVDYRKEHGPFKT
AADLTNVKGIGDATVKKNEDRILL

Nucleotide


Download         Length: 315 bp        

>NTDB_id=313702 D1115_RS10570 WP_128811308.1 2185756..2186070(-) (comEA) [Vibrio alfacsensis strain CAIM 1831]
ATGAAATGGATTTTAACAATAAGCTTAATGTTGTTGAGCTCGTTAGCTTGGGCTACAGACAGCCAAACTGGCAGCGCAGA
GACGTCAAGCAATAAAGCAGCAAAGTATGACGGTATTGAAATTACCGTAAACGTGAATACCGCTTCGGCACAAGAAATTG
CGAGTTTGCTTAACGGTATCGGTGAAAAGAAAGCACAAGATATCGTTGATTACCGTAAGGAGCATGGGCCATTTAAAACG
GCCGCAGATTTGACGAATGTAAAAGGTATTGGCGATGCCACCGTGAAGAAAAATGAGGACCGAATCCTACTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(42-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

69.231

100

0.692
  comEA Vibrio campbellii strain DS40M4

68.269

100

0.683
  comEA Vibrio cholerae C6706

57.447

90.385

0.519
  comEA Vibrio cholerae strain A1552

57.447

90.385

0.519
  comEA/comE1 Glaesserella parasuis strain SC1401

38.318

100

0.394
  comEA Lactococcus lactis subsp. cremoris KW2

46.429

80.769

0.375

Multiple sequence alignment