Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   D2E16_RS05720 Genome accession   NZ_CP032064
Coordinates   1167956..1168798 (+) Length   280 a.a.
NCBI ID   WP_192369385.1    Uniprot ID   -
Organism   Streptococcus suis strain YSJ17     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1162956..1173798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2E16_RS05690 (D2E16_05825) - 1163790..1164569 (+) 780 WP_044749835.1 ribonuclease HII -
  D2E16_RS05695 (D2E16_05830) - 1164566..1165576 (+) 1011 WP_024419479.1 YdcF family protein -
  D2E16_RS05700 (D2E16_05835) trhA 1165611..1166261 (-) 651 WP_192369383.1 PAQR family membrane homeostasis protein TrhA -
  D2E16_RS05705 (D2E16_05840) - 1166251..1166802 (-) 552 WP_192369384.1 DUF1836 domain-containing protein -
  D2E16_RS05710 (D2E16_05845) - 1166899..1167210 (-) 312 WP_032511238.1 rhodanese-like domain-containing protein -
  D2E16_RS05715 (D2E16_05850) - 1167340..1167897 (+) 558 WP_004195692.1 sugar O-acetyltransferase -
  D2E16_RS05720 (D2E16_05855) dprA 1167956..1168798 (+) 843 WP_192369385.1 DNA-processing protein DprA Machinery gene
  D2E16_RS05725 (D2E16_05860) topA 1168891..1170984 (+) 2094 WP_192369386.1 type I DNA topoisomerase -
  D2E16_RS05730 (D2E16_05865) rplJ 1171551..1172045 (+) 495 WP_002936486.1 50S ribosomal protein L10 -
  D2E16_RS05735 (D2E16_05870) rplL 1172111..1172476 (+) 366 WP_002936483.1 50S ribosomal protein L7/L12 -
  D2E16_RS05740 (D2E16_05875) - 1172675..1172848 (+) 174 WP_192369387.1 hypothetical protein -
  D2E16_RS05745 (D2E16_05880) - 1172845..1173663 (+) 819 WP_044762683.1 replication initiator protein A -

Sequence

Protein


Download         Length: 280 a.a.        Molecular weight: 31227.10 Da        Isoelectric Point: 8.6615

>NTDB_id=313529 D2E16_RS05720 WP_192369385.1 1167956..1168798(+) (dprA) [Streptococcus suis strain YSJ17]
MNNFELFKWKKAGLTNLNVNKVLAYQAKHGKKLTLRNVAVVSECKNPVLFMENYKNLDTKACREEFNKYPSFSILDDIYP
LALKQIYNPPVLLFYQGDLELLEKSKLAVVGTRNASKNGVQSVQKIIKELNNRFVIVSGLARGIDTAAHIASLKNGGQTI
AVIGTGLDNIYPKENRELQTYIGKHHLVLTEYEPGAQPLKYHFPERNRIIAGLVEGLVVCEAKMRSGSLITCERALEEGR
DVFAIPGSIMDGKSDGCHHLIQEGAKCITSGLDIISEYQF

Nucleotide


Download         Length: 843 bp        

>NTDB_id=313529 D2E16_RS05720 WP_192369385.1 1167956..1168798(+) (dprA) [Streptococcus suis strain YSJ17]
ATGAATAATTTTGAATTGTTTAAATGGAAAAAAGCAGGTTTGACCAATCTTAATGTGAATAAAGTTTTGGCCTATCAAGC
AAAACACGGAAAAAAATTGACCTTGCGAAATGTCGCTGTAGTGTCTGAATGTAAAAATCCAGTGCTATTTATGGAAAATT
ATAAGAATCTAGATACAAAAGCCTGTCGCGAGGAATTTAATAAGTATCCATCATTTTCAATTTTAGATGACATCTATCCT
TTGGCGCTCAAACAGATTTACAATCCACCTGTACTTTTGTTTTATCAAGGGGATTTAGAATTGCTGGAAAAATCAAAGCT
GGCAGTTGTTGGTACACGAAATGCCAGTAAAAATGGCGTTCAGTCTGTTCAGAAGATTATCAAAGAACTCAACAATCGCT
TTGTCATTGTCAGTGGTTTGGCAAGAGGAATTGATACAGCAGCCCACATCGCCAGTTTGAAAAATGGAGGCCAAACCATT
GCTGTAATTGGAACAGGTTTAGATAATATTTATCCAAAAGAAAACAGAGAATTACAGACCTACATCGGAAAACACCATTT
AGTTTTGACTGAATATGAACCAGGTGCTCAGCCTCTCAAATACCATTTTCCAGAACGCAATCGCATTATAGCTGGTTTGG
TGGAAGGATTGGTAGTCTGCGAGGCAAAAATGCGGTCTGGCAGCTTGATTACTTGTGAGCGTGCCTTGGAAGAAGGAAGA
GATGTGTTTGCTATTCCAGGTTCCATTATGGACGGAAAATCAGATGGTTGTCATCATCTGATTCAAGAGGGAGCAAAGTG
CATTACATCAGGCTTGGACATCATTTCTGAGTATCAATTTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-269)

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

70.714

100

0.707
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

63.571

100

0.636
  dprA/cilB/dalA Streptococcus pneumoniae D39

63.571

100

0.636
  dprA/cilB/dalA Streptococcus pneumoniae R6

63.571

100

0.636
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

63.571

100

0.636
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

63.571

100

0.636
  dprA/cilB/dalA Streptococcus mitis SK321

63.571

100

0.636
  dprA Lactococcus lactis subsp. cremoris KW2

60.714

100

0.607
  dprA Bacillus subtilis subsp. subtilis str. 168

51.741

71.786

0.371
  dprA Legionella pneumophila strain ERS1305867

41.7

88.214

0.368

Multiple sequence alignment