Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | D0853_RS03220 | Genome accession | NZ_CP031781 |
| Coordinates | 607892..608311 (-) | Length | 139 a.a. |
| NCBI ID | WP_005479693.1 | Uniprot ID | Q87LT8 |
| Organism | Vibrio parahaemolyticus strain VPD14 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 602892..613311
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D0853_RS03200 (D0853_03205) | coaE | 603401..604015 (-) | 615 | WP_005480887.1 | dephospho-CoA kinase | - |
| D0853_RS03205 (D0853_03210) | pilD | 604016..604885 (-) | 870 | WP_005490359.1 | A24 family peptidase | Machinery gene |
| D0853_RS03210 (D0853_03215) | pilC | 604950..606173 (-) | 1224 | WP_005479682.1 | type II secretion system F family protein | Machinery gene |
| D0853_RS03215 (D0853_03220) | pilB | 606197..607882 (-) | 1686 | WP_005479695.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| D0853_RS03220 (D0853_03225) | pilA | 607892..608311 (-) | 420 | WP_005479693.1 | pilin | Machinery gene |
| D0853_RS03225 (D0853_03230) | nadC | 608574..609461 (-) | 888 | WP_005479699.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| D0853_RS03230 (D0853_03235) | ampD | 609554..610105 (+) | 552 | WP_005479703.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| D0853_RS03235 (D0853_03240) | pdhR | 610511..611278 (+) | 768 | WP_005462576.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
Sequence
Protein
Download Length: 139 a.a. Molecular weight: 14180.19 Da Isoelectric Point: 4.4684
>NTDB_id=311238 D0853_RS03220 WP_005479693.1 607892..608311(-) (pilA) [Vibrio parahaemolyticus strain VPD14]
MKHSKQKKQQGFTLIELMIVVAIIGVLAAAAIPAYQNYVTRSEVTSGLATVKALITPAELHYQENGIAAAATLAQLGVDV
AANDLGAIDSALAGGSPTLTFTFDADSSIDGGILTFTRDAATGWSCLPTAPAIAVDGCS
MKHSKQKKQQGFTLIELMIVVAIIGVLAAAAIPAYQNYVTRSEVTSGLATVKALITPAELHYQENGIAAAATLAQLGVDV
AANDLGAIDSALAGGSPTLTFTFDADSSIDGGILTFTRDAATGWSCLPTAPAIAVDGCS
Nucleotide
Download Length: 420 bp
>NTDB_id=311238 D0853_RS03220 WP_005479693.1 607892..608311(-) (pilA) [Vibrio parahaemolyticus strain VPD14]
ATGAAACACAGTAAACAGAAAAAACAACAGGGTTTCACTCTGATTGAGTTAATGATTGTGGTAGCGATTATCGGCGTTTT
GGCTGCAGCTGCTATCCCTGCTTATCAAAATTATGTGACTCGCTCTGAAGTTACATCAGGGTTAGCAACCGTTAAAGCTC
TGATCACACCGGCTGAGCTGCATTACCAAGAAAATGGTATCGCGGCGGCTGCAACATTAGCCCAATTGGGAGTTGATGTT
GCAGCTAATGACTTAGGAGCTATTGATTCTGCCCTTGCAGGTGGTAGTCCAACTCTGACATTTACCTTCGATGCAGACAG
TTCTATCGACGGTGGGATACTAACGTTCACAAGAGACGCTGCAACTGGTTGGTCATGTTTACCTACTGCACCAGCAATTG
CAGTCGATGGTTGCAGTTAA
ATGAAACACAGTAAACAGAAAAAACAACAGGGTTTCACTCTGATTGAGTTAATGATTGTGGTAGCGATTATCGGCGTTTT
GGCTGCAGCTGCTATCCCTGCTTATCAAAATTATGTGACTCGCTCTGAAGTTACATCAGGGTTAGCAACCGTTAAAGCTC
TGATCACACCGGCTGAGCTGCATTACCAAGAAAATGGTATCGCGGCGGCTGCAACATTAGCCCAATTGGGAGTTGATGTT
GCAGCTAATGACTTAGGAGCTATTGATTCTGCCCTTGCAGGTGGTAGTCCAACTCTGACATTTACCTTCGATGCAGACAG
TTCTATCGACGGTGGGATACTAACGTTCACAAGAGACGCTGCAACTGGTTGGTCATGTTTACCTACTGCACCAGCAATTG
CAGTCGATGGTTGCAGTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
100 |
100 |
1 |
| pilA | Pseudomonas aeruginosa PAK |
48.507 |
96.403 |
0.468 |
| pilA | Vibrio cholerae strain A1552 |
41.892 |
100 |
0.446 |
| pilA | Vibrio cholerae C6706 |
41.892 |
100 |
0.446 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
41.892 |
100 |
0.446 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
35.862 |
100 |
0.374 |
| comF | Acinetobacter baylyi ADP1 |
36.691 |
100 |
0.367 |