Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   SMLT_RS17885 Genome accession   NC_010943
Coordinates   3834879..3836252 (+) Length   457 a.a.
NCBI ID   WP_005410795.1    Uniprot ID   A0A854E393
Organism   Stenotrophomonas maltophilia K279a     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3829879..3841252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMLT_RS17870 (Smlt3752) sucD 3830781..3831656 (-) 876 WP_005410793.1 succinate--CoA ligase subunit alpha -
  SMLT_RS17875 (Smlt3753) sucC 3831678..3832847 (-) 1170 WP_004154430.1 ADP-forming succinate--CoA ligase subunit beta -
  SMLT_RS17880 (Smlt3754) - 3833205..3834818 (+) 1614 WP_005410794.1 ATP-binding protein -
  SMLT_RS17885 (Smlt3755) pilR 3834879..3836252 (+) 1374 WP_005410795.1 sigma-54 dependent transcriptional regulator Regulator
  SMLT_RS17890 (Smlt3756) pilB 3836378..3838111 (-) 1734 WP_012481096.1 type IV-A pilus assembly ATPase PilB Machinery gene
  SMLT_RS17895 (Smlt3757) - 3838334..3838741 (-) 408 WP_012481097.1 pilin -
  SMLT_RS17900 (Smlt3758) - 3838894..3839316 (-) 423 WP_012481098.1 pilin -
  SMLT_RS17905 (Smlt3759) pilC 3839670..3840929 (+) 1260 WP_012481099.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49515.76 Da        Isoelectric Point: 6.4407

>NTDB_id=31102 SMLT_RS17885 WP_005410795.1 3834879..3836252(+) (pilR) [Stenotrophomonas maltophilia K279a]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNAERPAPGPNAEQGGRLLGHSQAMDVLRTTIGKVARS
QAPVYILGESGVGKELVARTIHAQGARAAGPFVPVNCGAIPGELMESEFFGHRKGSFSGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRAVGAANEEPVDVRILSATHKDLAELVEDGRFRHDLYYRINVIELKVPPLRERRQDLPE
LAAAVLARLARSHGRATPLLAPSALEALAQYAFPGNVRELENILERALALAEEDCIGADDLRLPQHAPRAPGSAAPAEAV
ADLQPGSAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=31102 SMLT_RS17885 WP_005410795.1 3834879..3836252(+) (pilR) [Stenotrophomonas maltophilia K279a]
ATGAATGAAACCCGCAGCGCCCTCGTCGTCGACGACGAACGCGACATCCGCGAACTGCTGGTGCTGACCCTCGGCCGCAT
GGGGCTGCGCATCAGTACCGCCGCCAACCTGGCCGAGGCACGTGAGCTGCTGGCCAGCAATCCGTACGACCTGTGCATCA
CCGACATGCGCCTGCCCGATGGCAACGGCATCGAACTGGTCAGCGAGATCGCCCAGCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCATTCGGCAGCATGGATCTCGCTGTGGAGGCACTGAAGGCCGGTGCGTTCGATTTCGTCAGCAAGCCGGT
GGACATCTCGGTGCTGCGCGGACTGGTCAAGCACGCGCTGGAACTCAACAACGCCGAGCGCCCCGCACCGGGCCCCAACG
CCGAACAGGGCGGACGCCTGCTGGGCCACTCGCAGGCCATGGATGTGCTGCGCACCACCATCGGCAAGGTCGCGCGCAGC
CAGGCGCCGGTCTACATCCTCGGCGAGTCGGGCGTCGGCAAGGAGCTGGTTGCACGCACCATCCATGCCCAGGGCGCGCG
CGCGGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGGCGAGCTGATGGAGAGCGAATTCTTCGGCCACCGCA
AGGGCAGTTTCAGCGGCGCACACGCTGACAAGCCTGGCCTGTTCCAAGCTGCGCATGGCGGCACCCTGTTCCTGGACGAA
GTGGCTGAACTGCCACTGCAGATGCAGGTGAAGCTGCTGCGCGCGATCCAGGAAAAGTCGGTGCGCGCGGTGGGCGCGGC
CAACGAGGAGCCGGTGGATGTCCGCATCCTCTCGGCCACCCACAAGGACCTGGCCGAGCTGGTCGAGGACGGGCGCTTCC
GCCACGACCTGTACTACCGCATCAACGTGATCGAACTGAAGGTGCCGCCACTGCGCGAACGCCGCCAGGACCTGCCCGAA
CTGGCCGCGGCCGTGCTGGCCCGCCTGGCCCGCAGCCACGGCCGCGCCACCCCGCTGCTGGCGCCCTCGGCGCTGGAAGC
CCTGGCGCAGTACGCGTTCCCGGGCAATGTGCGCGAGCTGGAGAACATCCTGGAACGTGCGCTGGCCCTGGCCGAGGAAG
ACTGCATCGGCGCCGATGACCTGCGCCTGCCGCAGCACGCGCCGCGTGCACCCGGCAGTGCGGCGCCCGCCGAAGCCGTG
GCCGACCTGCAGCCGGGCAGTGCCGCCCTGCCCTCCTACATCGAGCAGCTCGAGCGCAGCGCCATCCAGCGTGCGCTGGA
AGAGAACCGCTGGAACAAGACCCGTACCGCCGCGCAGCTGGGCATCACCTTCCGTGCGCTGCGCTACAAGCTGAAGAAGC
TGGGGATGGAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(414-454)

Response regulator receiver domain (Response_reg)

(8-115)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A854E393

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.656

99.344

0.632
  pilR Acinetobacter baumannii strain A118

48.38

100

0.49
  luxO Vibrio cholerae strain A1552

37.079

97.374

0.361

Multiple sequence alignment