Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   D0S48_RS12400 Genome accession   NZ_CP031739
Coordinates   2494997..2495497 (+) Length   166 a.a.
NCBI ID   WP_144540265.1    Uniprot ID   -
Organism   Psychrobacillus sp. AK 1817     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2489997..2500497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0S48_RS12365 (D0S48_12375) - 2490301..2490999 (+) 699 WP_144540277.1 DUF554 domain-containing protein -
  D0S48_RS12370 (D0S48_12380) yyaC 2490961..2491554 (-) 594 WP_144540275.1 spore protease YyaC -
  D0S48_RS12375 (D0S48_12385) - 2491634..2492488 (+) 855 WP_144540273.1 mechanosensitive ion channel family protein -
  D0S48_RS12380 (D0S48_12390) - 2492498..2492698 (+) 201 WP_144540271.1 DUF951 domain-containing protein -
  D0S48_RS12385 (D0S48_12395) ychF 2492784..2493884 (+) 1101 WP_144540269.1 redox-regulated ATPase YchF -
  D0S48_RS12390 (D0S48_12400) - 2493939..2494496 (-) 558 WP_225216057.1 DUF3267 domain-containing protein -
  D0S48_RS12395 (D0S48_12405) rpsF 2494665..2494955 (+) 291 WP_144540267.1 30S ribosomal protein S6 -
  D0S48_RS12400 (D0S48_12410) ssbA 2494997..2495497 (+) 501 WP_144540265.1 single-stranded DNA-binding protein Machinery gene
  D0S48_RS12405 (D0S48_12415) rpsR 2495544..2495780 (+) 237 WP_142540806.1 30S ribosomal protein S18 -
  D0S48_RS12410 (D0S48_12420) - 2496135..2497076 (+) 942 WP_144540263.1 YybS family protein -
  D0S48_RS12415 (D0S48_12425) - 2497089..2499065 (+) 1977 WP_151111906.1 DHH family phosphoesterase -
  D0S48_RS12420 (D0S48_12430) rplI 2499062..2499511 (+) 450 WP_144540261.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18353.09 Da        Isoelectric Point: 4.7621

>NTDB_id=310948 D0S48_RS12400 WP_144540265.1 2494997..2495497(+) (ssbA) [Psychrobacillus sp. AK 1817]
MINRVVLVGRLTKDPELRYTPSGVAMARFTLAVNRTFSNQQGEREADFINCVVWRKQAENTANFLKKGSLAGVEGRIQTG
SYEGQDGKRVYTTDVVADSVQFLEPRGSSGDRGQGGQSYGGGQQQNSYPTYQQNQPMNQQNYTRVDEDPFGNSSGPIEVS
DDDLPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=310948 D0S48_RS12400 WP_144540265.1 2494997..2495497(+) (ssbA) [Psychrobacillus sp. AK 1817]
ATGATTAACCGTGTCGTATTAGTTGGAAGACTAACAAAAGATCCGGAACTTCGATATACGCCAAGTGGTGTTGCAATGGC
TAGATTTACACTTGCTGTAAATCGTACATTCTCTAACCAACAAGGCGAAAGAGAAGCTGATTTTATCAACTGTGTCGTTT
GGAGAAAACAAGCGGAAAACACAGCCAATTTCTTGAAAAAAGGAAGCTTGGCAGGTGTAGAAGGGCGTATTCAAACGGGT
AGTTATGAAGGACAAGATGGGAAACGTGTTTATACGACAGACGTTGTCGCAGACAGCGTTCAGTTCTTAGAACCACGCGG
TAGCTCTGGTGATCGTGGCCAAGGTGGACAATCATATGGCGGCGGACAACAACAGAACTCTTATCCGACATATCAGCAAA
ACCAACCAATGAATCAGCAAAACTATACACGTGTAGATGAAGATCCATTTGGAAATAGTAGTGGTCCGATTGAAGTATCT
GATGACGACCTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.644

100

0.657
  ssb Latilactobacillus sakei subsp. sakei 23K

54.07

100

0.56
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

63.855

0.398
  ssb Neisseria meningitidis MC58

36.158

100

0.386
  ssb Neisseria gonorrhoeae MS11

36.158

100

0.386
  ssb Glaesserella parasuis strain SC1401

34.831

100

0.373

Multiple sequence alignment