Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   D0Z58_RS05105 Genome accession   NZ_CP031738
Coordinates   958319..959155 (+) Length   278 a.a.
NCBI ID   WP_002989770.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain SP1336     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 953319..964155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0Z58_RS05075 (D0Z58_05070) - 953801..954241 (+) 441 WP_024623381.1 hypothetical protein -
  D0Z58_RS05080 (D0Z58_05075) - 954291..955202 (-) 912 WP_002989777.1 diacylglycerol kinase family protein -
  D0Z58_RS05085 (D0Z58_05080) - 955319..955969 (-) 651 WP_002984629.1 hemolysin III family protein -
  D0Z58_RS05090 (D0Z58_05085) - 955966..956406 (-) 441 WP_002989774.1 DUF1836 domain-containing protein -
  D0Z58_RS05095 (D0Z58_05090) ylqF 956625..957473 (+) 849 WP_002984625.1 ribosome biogenesis GTPase YlqF -
  D0Z58_RS05100 (D0Z58_05095) - 957463..958254 (+) 792 WP_002989771.1 ribonuclease HII -
  D0Z58_RS05105 (D0Z58_05100) dprA 958319..959155 (+) 837 WP_002989770.1 DNA-processing protein DprA Machinery gene
  D0Z58_RS05110 (D0Z58_05105) topA 959262..961391 (+) 2130 WP_129796255.1 type I DNA topoisomerase -
  D0Z58_RS09680 - 961466..962323 (-) 858 Protein_931 LysR family transcriptional regulator -
  D0Z58_RS05125 (D0Z58_05120) - 962363..962929 (+) 567 Protein_932 PTS sugar transporter subunit IIC -
  D0Z58_RS05130 (D0Z58_05125) - 962944..963936 (+) 993 WP_002989762.1 D-lactate dehydrogenase -

Sequence


Protein


Download         Length: 278 a.a.        Molecular weight: 30956.84 Da        Isoelectric Point: 8.5841

>NTDB_id=310896 D0Z58_RS05105 WP_002989770.1 958319..959155(+) (dprA) [Streptococcus pyogenes strain SP1336]
MNHFELYKLKKAGLTNKNILNILDYQEHQEKSLSLRDMAVVSGCKHPSHFIEAYKQLDIQNLKIEFKQFPSISILDKHYP
MALKEIYNPPVLLFFQGNLDLLEKPKLAIVGSRRSSDTGVKSVRKILKELGNRFVIVSGLARGIDTSAHLACLKNGGQTI
AIIGTGLDRFYPKENRELQTFLGKNHLVLTEYGPGEEALSYHFPERNRIIAGLSRGILVVEAKNRSGSLITCQIGIEEGR
DIFAVPGNILDGKSEGCLQLIKEGATCVTSGMDILSEY

Nucleotide


Download         Length: 837 bp        

>NTDB_id=310896 D0Z58_RS05105 WP_002989770.1 958319..959155(+) (dprA) [Streptococcus pyogenes strain SP1336]
GTGAATCATTTTGAACTTTATAAGCTAAAGAAAGCTGGACTGACTAATAAAAACATTCTCAATATTCTTGACTACCAAGA
ACACCAGGAAAAATCGTTGTCACTTCGAGATATGGCCGTTGTTTCTGGTTGTAAGCATCCGTCTCACTTTATAGAAGCCT
ATAAGCAGTTAGATATTCAAAATTTAAAAATAGAATTTAAACAGTTTCCTAGTATTTCTATCTTAGATAAGCATTACCCA
ATGGCATTGAAAGAAATATACAATCCACCTGTCCTCTTGTTTTTTCAGGGAAATTTAGACCTTCTTGAGAAACCTAAATT
AGCCATTGTCGGCTCCAGACGCTCAAGCGATACCGGAGTAAAGTCTGTCCGTAAAATTCTTAAAGAACTCGGGAACCGTT
TTGTGATTGTTAGCGGACTTGCTCGAGGTATCGACACTAGTGCTCATTTAGCCTGCCTTAAAAATGGGGGACAAACCATC
GCTATTATTGGAACAGGGTTGGATCGCTTTTACCCTAAAGAAAATAGGGAGTTGCAAACTTTCTTAGGGAAAAATCATCT
TGTGCTAACAGAATACGGTCCAGGAGAAGAAGCTTTATCTTATCACTTTCCAGAACGGAATCGTATTATCGCAGGCCTTA
GCCGAGGTATTCTTGTCGTTGAAGCAAAAAATCGTTCAGGTTCCTTGATTACTTGTCAAATTGGGATAGAAGAAGGCCGA
GACATTTTTGCTGTCCCAGGAAACATTTTGGACGGGAAATCCGAAGGTTGCCTTCAGTTAATTAAAGAGGGAGCAACATG
CGTCACGTCGGGCATGGATATCCTTTCAGAGTACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

67.626

100

0.676

  dprA/cilB/dalA Streptococcus pneumoniae Rx1

60.791

100

0.608

  dprA/cilB/dalA Streptococcus pneumoniae D39

60.791

100

0.608

  dprA/cilB/dalA Streptococcus pneumoniae R6

60.791

100

0.608

  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

60.791

100

0.608

  dprA/cilB/dalA Streptococcus mitis SK321

60.791

100

0.608

  dprA/cilB/dalA Streptococcus mitis NCTC 12261

60.432

100

0.604

  dprA Lactococcus lactis subsp. cremoris KW2

57.194

100

0.572

  dprA Legionella pneumophila strain ERS1305867

42.857

85.612

0.367


Multiple sequence alignment