Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   D0C16_RS13380 Genome accession   NZ_CP031728
Coordinates   3123110..3125257 (-) Length   715 a.a.
NCBI ID   WP_151032844.1    Uniprot ID   A0A5J6PE29
Organism   Cellvibrio sp. KY-GH-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3118110..3130257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0C16_RS13360 (D0C16_13590) gcvH 3119176..3119568 (+) 393 WP_151032840.1 glycine cleavage system protein GcvH -
  D0C16_RS13365 (D0C16_13595) - 3119643..3121376 (-) 1734 WP_225318672.1 AAA family ATPase -
  D0C16_RS13370 (D0C16_13600) aroB 3121404..3122486 (-) 1083 WP_151032842.1 3-dehydroquinate synthase -
  D0C16_RS13375 (D0C16_13605) aroK 3122595..3123110 (-) 516 WP_151032843.1 shikimate kinase AroK -
  D0C16_RS13380 (D0C16_13610) pilQ 3123110..3125257 (-) 2148 WP_151032844.1 type IV pilus secretin PilQ family protein Machinery gene
  D0C16_RS13385 (D0C16_13615) - 3125294..3125818 (-) 525 WP_151032845.1 pilus assembly protein PilP -
  D0C16_RS13390 (D0C16_13620) - 3125815..3126435 (-) 621 WP_151032846.1 type 4a pilus biogenesis protein PilO -
  D0C16_RS13395 (D0C16_13625) - 3126435..3127022 (-) 588 WP_151032847.1 PilN domain-containing protein -
  D0C16_RS13400 (D0C16_13630) pilM 3127022..3128089 (-) 1068 WP_151032848.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 715 a.a.        Molecular weight: 78313.73 Da        Isoelectric Point: 4.8263

>NTDB_id=310790 D0C16_RS13380 WP_151032844.1 3123110..3125257(-) (pilQ) [Cellvibrio sp. KY-GH-1]
MRKFLLALIGVVASPVLWANTLKSIDFSQLPGERFEVRMAFDSAPPEPKGYTIEKPARIVFDFPDVVSGLKERRFPLAVD
NGQSAMVLTSEGRTRLILNLNDLATYTTRHDGNSFIVEVGAVNGVERAQVQRPSVEVPNTALADRKDALGNQTRVTNIDF
RRGTAGEGRVIVTLSNPKVSADMVGTGAGVKLSFKDAWLPPELRRRLDVVDFATPVSLVAASQEGESAVLNISAGGDFDY
LAYQTDNEYVVSIKPLSAQEKQEKKKDFEYTGEKLSLDFQDIEVRAVLQIIADFTELNLVASDTVQGRITLRLQNVPWDQ
ALEMVLKNKGLDKRQVGNVLMVAPAAEIAERERQEITTKKQLEELAPLRTEYIRVRYANAKEMFELFRGQSGGKTGGSGG
GQGGNRATGSVLSERGQGVVDERTNSIIITDTAERIESFKRLVEQIDIPIRQVMIEARIVIANTDFQRELGIRWGGAGYN
ANRSRVIDFAGSQDGLDDEDGTHPSGWFTQGPDDEKTLNITENNVVDLAVASPYASAAIGVLTDSTYLDLELSALENSGY
AEIVSQPKVITSDKQLAIIKSGKEIGFSETAPSGGTTTGFREAVLKLEVTPQITPDNRIIMDLNVWKDSVANVEVSGRPT
LDITRLQTKVLVNNGQTVVLGGVFSVEGTKTENKVPVLGDIPYLGRLFKKTLDNQFKTELLIFVTPKLMSENLSN

Nucleotide


Download         Length: 2148 bp        

>NTDB_id=310790 D0C16_RS13380 WP_151032844.1 3123110..3125257(-) (pilQ) [Cellvibrio sp. KY-GH-1]
ATGCGTAAATTTTTATTGGCGTTGATCGGGGTTGTTGCTTCGCCTGTTTTGTGGGCTAACACTCTTAAGTCTATCGATTT
TTCTCAGTTGCCTGGGGAGCGTTTTGAAGTGCGTATGGCATTTGACTCTGCTCCTCCAGAGCCTAAGGGCTACACGATAG
AGAAGCCAGCGCGAATTGTTTTCGATTTTCCTGATGTAGTAAGCGGATTAAAGGAGCGGCGCTTTCCGTTGGCAGTGGAC
AATGGTCAAAGTGCTATGGTGCTGACCAGTGAAGGGCGCACACGTCTCATTCTAAATTTGAACGATTTAGCAACTTATAC
AACGCGTCATGATGGTAATAGTTTTATTGTAGAAGTTGGTGCAGTTAATGGGGTTGAAAGGGCGCAGGTCCAACGGCCTT
CTGTCGAGGTTCCAAATACTGCGTTGGCTGATCGTAAGGATGCTTTGGGTAATCAAACACGAGTGACCAATATTGATTTC
AGACGCGGGACTGCGGGCGAAGGCCGCGTGATCGTTACCTTGTCAAATCCTAAAGTAAGCGCCGATATGGTTGGCACTGG
TGCTGGAGTTAAATTGTCATTTAAAGATGCTTGGTTACCTCCAGAGTTGCGCCGCCGCTTGGATGTGGTGGATTTTGCTA
CGCCAGTCTCTCTCGTAGCTGCGTCGCAAGAGGGTGAGAGCGCAGTGTTGAATATCAGTGCTGGTGGTGACTTCGATTAT
TTGGCGTATCAAACGGATAATGAGTATGTAGTTAGTATCAAGCCGTTGAGTGCACAGGAAAAGCAAGAAAAGAAGAAAGA
CTTTGAGTACACCGGGGAAAAACTTTCTTTGGATTTTCAGGATATTGAGGTCCGGGCGGTACTGCAGATCATTGCAGATT
TCACTGAATTAAATCTGGTCGCCAGTGATACGGTGCAGGGTCGTATTACTTTGCGTTTGCAAAATGTGCCTTGGGATCAG
GCGCTCGAAATGGTTCTAAAAAATAAGGGGTTGGATAAGCGTCAGGTCGGTAATGTTTTGATGGTCGCGCCAGCCGCCGA
AATCGCCGAGCGCGAGCGCCAGGAAATTACTACCAAGAAGCAGTTGGAAGAGTTGGCTCCGCTCCGGACCGAATATATCC
GTGTTCGCTACGCAAATGCGAAAGAAATGTTTGAGTTGTTTAGAGGGCAGTCTGGTGGTAAGACTGGTGGGTCTGGTGGC
GGCCAAGGTGGAAACCGCGCTACAGGAAGCGTTCTTTCTGAGCGTGGTCAAGGTGTCGTTGATGAGCGCACCAATTCGAT
TATTATCACTGATACAGCAGAGCGTATTGAGTCCTTTAAGCGCTTGGTCGAGCAAATTGATATTCCCATTCGTCAAGTCA
TGATTGAGGCTCGTATTGTGATAGCCAATACAGATTTCCAGCGTGAATTGGGGATTCGCTGGGGTGGGGCTGGCTATAAT
GCAAACCGGAGTCGTGTAATTGATTTTGCTGGCTCTCAGGATGGTTTGGACGATGAAGATGGAACACATCCTTCAGGTTG
GTTTACTCAAGGGCCTGATGATGAAAAAACATTAAATATCACTGAAAATAACGTTGTAGATTTGGCGGTAGCTAGCCCCT
ATGCATCAGCAGCAATTGGTGTATTAACTGATAGTACATATTTAGATTTGGAGCTGAGTGCGCTGGAGAATTCTGGCTAC
GCAGAAATCGTGTCGCAACCTAAAGTTATTACCAGTGATAAGCAACTTGCGATCATTAAATCTGGTAAAGAAATCGGGTT
CTCGGAGACTGCGCCGAGTGGTGGTACCACAACAGGGTTCAGGGAAGCGGTATTAAAACTGGAGGTGACCCCCCAGATAA
CGCCAGACAACAGGATCATTATGGATCTCAATGTTTGGAAAGATTCTGTGGCGAACGTAGAGGTTTCAGGTAGGCCGACT
TTGGACATTACTCGCTTACAGACTAAGGTTCTCGTTAACAACGGGCAGACAGTTGTTCTAGGTGGTGTGTTCTCTGTCGA
AGGGACCAAAACTGAAAACAAAGTGCCTGTATTAGGTGATATTCCCTACTTGGGTAGATTGTTCAAGAAAACTCTTGATA
ATCAATTCAAGACCGAGCTGTTGATATTCGTTACTCCCAAGTTGATGTCGGAAAACCTGTCAAACTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(36-118)

Bacterial type II/III secretion system short domain (Secretin_N)

(371-452)

Bacterial type II and III secretion system protein (Secretin)

(554-709)

Secretin and TonB N terminus short domain (STN)

(298-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5J6PE29

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

47.318

100

0.481
  pilQ Acinetobacter baumannii strain A118

38.723

100

0.399
  pilQ Acinetobacter baumannii D1279779

38.723

100

0.399
  comQ Acinetobacter baylyi ADP1

40.374

97.343

0.393
  pilQ Legionella pneumophila strain Lp02

36.236

99.58

0.361

Multiple sequence alignment