Detailed information
Bioinformatically predicted
Overview
| Name | comEA/comE1 | Type | Machinery gene |
| Locus tag | D0B88_RS19230 | Genome accession | NZ_CP031727 |
| Coordinates | 2985139..2985453 (+) | Length | 104 a.a. |
| NCBI ID | WP_151057573.1 | Uniprot ID | - |
| Organism | Cellvibrio sp. KY-YJ-3 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2980139..2990453
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D0B88_RS12575 (D0B88_12670) | pheA | 2980361..2981470 (+) | 1110 | WP_151057569.1 | prephenate dehydratase | - |
| D0B88_RS12580 (D0B88_12675) | - | 2981477..2982391 (+) | 915 | WP_151057571.1 | prephenate dehydrogenase/arogenate dehydrogenase family protein | - |
| D0B88_RS12585 (D0B88_12680) | cysD | 2982530..2983438 (+) | 909 | WP_007640954.1 | sulfate adenylyltransferase subunit CysD | - |
| D0B88_RS12590 (D0B88_12685) | cysN | 2983509..2984930 (+) | 1422 | WP_007640956.1 | sulfate adenylyltransferase subunit CysN | - |
| D0B88_RS19230 (D0B88_12690) | comEA/comE1 | 2985139..2985453 (+) | 315 | WP_151057573.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| D0B88_RS12600 (D0B88_12695) | pyrF | 2985565..2986272 (+) | 708 | WP_151057574.1 | orotidine-5'-phosphate decarboxylase | - |
| D0B88_RS12605 (D0B88_12700) | cmk | 2986303..2986980 (+) | 678 | WP_191966427.1 | (d)CMP kinase | - |
| D0B88_RS12610 (D0B88_12705) | - | 2987120..2988472 (+) | 1353 | WP_151057576.1 | phosphomannomutase CpsG | - |
| D0B88_RS12615 (D0B88_12710) | galU | 2988498..2989391 (+) | 894 | WP_007640965.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
Sequence
Protein
Download Length: 104 a.a. Molecular weight: 11071.96 Da Isoelectric Point: 9.7278
>NTDB_id=310779 D0B88_RS19230 WP_151057573.1 2985139..2985453(+) (comEA/comE1) [Cellvibrio sp. KY-YJ-3]
MKYIVSFLSVLILGLASTFAVAVESASTPSPTAKAEVVAKQGVININTADVLELTKLKGIGVKKAEAIVAWRTANGDFKS
VDQLLEVKGIGEATLMQNRENIRI
MKYIVSFLSVLILGLASTFAVAVESASTPSPTAKAEVVAKQGVININTADVLELTKLKGIGVKKAEAIVAWRTANGDFKS
VDQLLEVKGIGEATLMQNRENIRI
Nucleotide
Download Length: 315 bp
>NTDB_id=310779 D0B88_RS19230 WP_151057573.1 2985139..2985453(+) (comEA/comE1) [Cellvibrio sp. KY-YJ-3]
ATGAAATACATTGTGTCTTTTCTGTCGGTTTTGATCTTGGGGTTGGCTTCCACATTTGCAGTTGCTGTTGAGTCTGCATC
TACTCCTTCTCCAACTGCCAAAGCTGAAGTTGTTGCTAAGCAAGGTGTTATTAATATAAATACCGCTGATGTGCTTGAAC
TGACCAAGCTGAAGGGTATAGGTGTTAAAAAAGCAGAGGCTATTGTGGCTTGGCGTACAGCGAATGGCGATTTTAAAAGT
GTTGACCAGTTATTAGAGGTAAAAGGTATAGGTGAAGCAACCTTGATGCAAAATCGTGAAAATATCCGTATATAA
ATGAAATACATTGTGTCTTTTCTGTCGGTTTTGATCTTGGGGTTGGCTTCCACATTTGCAGTTGCTGTTGAGTCTGCATC
TACTCCTTCTCCAACTGCCAAAGCTGAAGTTGTTGCTAAGCAAGGTGTTATTAATATAAATACCGCTGATGTGCTTGAAC
TGACCAAGCTGAAGGGTATAGGTGTTAAAAAAGCAGAGGCTATTGTGGCTTGGCGTACAGCGAATGGCGATTTTAAAAGT
GTTGACCAGTTATTAGAGGTAAAAGGTATAGGTGAAGCAACCTTGATGCAAAATCGTGAAAATATCCGTATATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
45.536 |
100 |
0.49 |
| comEA | Vibrio cholerae strain A1552 |
48.515 |
97.115 |
0.471 |
| comEA | Vibrio cholerae C6706 |
48.515 |
97.115 |
0.471 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
44.34 |
100 |
0.452 |
| comEA | Legionella pneumophila strain ERS1305867 |
40.777 |
99.038 |
0.404 |
| comEA | Legionella pneumophila str. Paris |
40.777 |
99.038 |
0.404 |
| comEA | Vibrio campbellii strain DS40M4 |
38.835 |
99.038 |
0.385 |