Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | GLOV_RS16890 | Genome accession | NC_010814 |
| Coordinates | 3667059..3667499 (-) | Length | 146 a.a. |
| NCBI ID | WP_012471438.1 | Uniprot ID | B3E213 |
| Organism | Trichlorobacter lovleyi SZ | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3662059..3672499
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GLOV_RS16875 (Glov_3408) | - | 3662463..3663884 (-) | 1422 | WP_012471435.1 | HAMP domain-containing sensor histidine kinase | - |
| GLOV_RS16880 (Glov_3409) | - | 3664004..3665296 (+) | 1293 | WP_012471436.1 | BamA/TamA family outer membrane protein | - |
| GLOV_RS16885 (Glov_3410) | - | 3665279..3667096 (-) | 1818 | WP_235620062.1 | ABC transporter ATP-binding protein | - |
| GLOV_RS16890 (Glov_3411) | ssb | 3667059..3667499 (-) | 441 | WP_012471438.1 | single-stranded DNA-binding protein | Machinery gene |
| GLOV_RS16895 (Glov_3412) | - | 3667639..3668343 (+) | 705 | WP_012471439.1 | 1-acyl-sn-glycerol-3-phosphate acyltransferase | - |
| GLOV_RS16900 (Glov_3413) | - | 3668340..3668525 (+) | 186 | WP_012471440.1 | hypothetical protein | - |
| GLOV_RS16905 (Glov_3414) | - | 3668529..3668924 (+) | 396 | WP_012471441.1 | hypothetical protein | - |
| GLOV_RS16910 (Glov_3415) | - | 3669110..3670702 (+) | 1593 | WP_235620119.1 | ribonuclease J | - |
| GLOV_RS16915 (Glov_3416) | - | 3670862..3672499 (-) | 1638 | WP_012471443.1 | fatty acid--CoA ligase | - |
Sequence
Protein
Download Length: 146 a.a. Molecular weight: 16008.82 Da Isoelectric Point: 5.3027
>NTDB_id=31055 GLOV_RS16890 WP_012471438.1 3667059..3667499(-) (ssb) [Trichlorobacter lovleyi SZ]
MASLNKVMLIGNLGKDPEVRYTTSGQAVASFNLATSEKFKNKSGDWEERTEWHRVTLWGKLAEIAGEYLAKGKTVYIEGR
LQTRKWTDRDGNDKYTTEIVGDRMQMLSGKGDGGGGGGARRPAAGGVADTTVSYDEPPFQDDDIPF
MASLNKVMLIGNLGKDPEVRYTTSGQAVASFNLATSEKFKNKSGDWEERTEWHRVTLWGKLAEIAGEYLAKGKTVYIEGR
LQTRKWTDRDGNDKYTTEIVGDRMQMLSGKGDGGGGGGARRPAAGGVADTTVSYDEPPFQDDDIPF
Nucleotide
Download Length: 441 bp
>NTDB_id=31055 GLOV_RS16890 WP_012471438.1 3667059..3667499(-) (ssb) [Trichlorobacter lovleyi SZ]
ATGGCCAGTCTTAATAAGGTAATGCTGATCGGAAATCTGGGGAAAGACCCGGAGGTGCGCTACACCACTTCGGGCCAGGC
GGTGGCAAGTTTTAACCTGGCCACCAGTGAGAAGTTCAAGAACAAGAGCGGTGACTGGGAAGAGCGGACTGAATGGCACC
GGGTGACGCTGTGGGGTAAACTGGCCGAAATTGCTGGTGAATATCTGGCCAAGGGCAAGACCGTCTATATCGAGGGACGC
TTGCAGACCCGCAAGTGGACTGACCGTGACGGCAATGATAAATATACCACTGAGATTGTTGGTGACCGGATGCAGATGCT
GAGCGGCAAGGGTGATGGCGGTGGTGGTGGCGGCGCCCGCCGTCCGGCAGCCGGCGGTGTGGCCGATACCACGGTCAGCT
ACGATGAGCCTCCCTTCCAGGACGACGACATCCCGTTCTGA
ATGGCCAGTCTTAATAAGGTAATGCTGATCGGAAATCTGGGGAAAGACCCGGAGGTGCGCTACACCACTTCGGGCCAGGC
GGTGGCAAGTTTTAACCTGGCCACCAGTGAGAAGTTCAAGAACAAGAGCGGTGACTGGGAAGAGCGGACTGAATGGCACC
GGGTGACGCTGTGGGGTAAACTGGCCGAAATTGCTGGTGAATATCTGGCCAAGGGCAAGACCGTCTATATCGAGGGACGC
TTGCAGACCCGCAAGTGGACTGACCGTGACGGCAATGATAAATATACCACTGAGATTGTTGGTGACCGGATGCAGATGCT
GAGCGGCAAGGGTGATGGCGGTGGTGGTGGCGGCGCCCGCCGTCCGGCAGCCGGCGGTGTGGCCGATACCACGGTCAGCT
ACGATGAGCCTCCCTTCCAGGACGACGACATCCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
50.847 |
100 |
0.616 |
| ssb | Glaesserella parasuis strain SC1401 |
42.222 |
100 |
0.521 |
| ssb | Neisseria meningitidis MC58 |
47.826 |
94.521 |
0.452 |
| ssb | Neisseria gonorrhoeae MS11 |
47.826 |
94.521 |
0.452 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
31.792 |
100 |
0.377 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
30.994 |
100 |
0.363 |