Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CH576_RS02160 Genome accession   NZ_CP031691
Coordinates   433657..434310 (-) Length   217 a.a.
NCBI ID   WP_080474403.1    Uniprot ID   -
Organism   Haemophilus influenzae strain P615-8618     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 428657..439310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH576_RS02160 (CH576_02160) sxy/tfoX 433657..434310 (-) 654 WP_080474403.1 DNA transformation protein TfoX Regulator
  CH576_RS02165 (CH576_02165) recA 434683..435747 (+) 1065 WP_005654959.1 recombinase RecA Machinery gene
  CH576_RS02170 (CH576_02170) recX 435827..436285 (+) 459 WP_105894522.1 recombination regulator RecX -
  CH576_RS02175 (CH576_02175) crcB 436282..436668 (-) 387 WP_116942062.1 fluoride efflux transporter CrcB -
  CH576_RS02180 (CH576_02180) - 436668..437486 (-) 819 WP_021034534.1 Cof-type HAD-IIB family hydrolase -
  CH576_RS02185 (CH576_02185) - 437890..438894 (+) 1005 WP_048954607.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25001.38 Da        Isoelectric Point: 10.0171

>NTDB_id=310224 CH576_RS02160 WP_080474403.1 433657..434310(-) (sxy/tfoX) [Haemophilus influenzae strain P615-8618]
MNIKDEHIESVCSLLDQLVGNVSFKNLFTGYGLFHKEETMFAIWQNKKLYLRGEGVLAIQLTKLGCEPFTTNELNKRFVL
SQYYALSDQVLRSNRLCRKLIILSIKQILEQKLECTLRKLNRLKDLPNLTIKHERALIKVGITNVAMLREIGAENALVEL
KKSGSGATLDFYWKLVCALQNKNSQMLSQAEKERLLKKLNEVLRKNGLKGYRKLDDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=310224 CH576_RS02160 WP_080474403.1 433657..434310(-) (sxy/tfoX) [Haemophilus influenzae strain P615-8618]
ATGAATATAAAGGATGAGCATATAGAGAGCGTTTGCTCCTTGTTAGATCAGTTAGTAGGAAATGTTTCCTTTAAAAATCT
TTTTACTGGTTACGGTTTGTTTCACAAGGAAGAGACAATGTTTGCCATTTGGCAAAATAAAAAACTTTATTTACGCGGTG
AGGGTGTTCTCGCAATTCAATTAACTAAATTAGGTTGTGAACCTTTTACAACGAATGAATTGAATAAACGGTTTGTGCTT
TCACAATATTATGCACTTTCTGATCAGGTTTTACGTAGTAATAGATTGTGTAGAAAATTGATTATTCTTTCTATTAAGCA
GATTCTTGAGCAGAAGCTAGAATGTACGTTAAGAAAATTGAATCGATTAAAGGATTTACCCAATTTAACGATTAAACATG
AAAGAGCTTTAATAAAAGTTGGTATTACAAATGTTGCGATGCTAAGAGAGATTGGCGCAGAAAATGCATTGGTGGAATTA
AAGAAAAGTGGCAGTGGTGCTACGCTTGATTTTTATTGGAAATTAGTATGTGCTTTGCAAAATAAAAATAGTCAGATGTT
AAGTCAAGCTGAAAAAGAGCGTTTATTGAAGAAATTAAACGAAGTTTTGAGAAAAAATGGCTTAAAAGGCTATAGAAAAT
TAGATGATGAATAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-107)

TfoX C-terminal domain (TfoX_C)

(121-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

98.618

100

0.986

Multiple sequence alignment