Detailed information    

insolico Bioinformatically predicted

Overview


Name   HI0659   Type   Machinery gene
Locus tag   CH576_RS01710 Genome accession   NZ_CP031691
Coordinates   344123..344419 (+) Length   98 a.a.
NCBI ID   WP_050829196.1    Uniprot ID   -
Organism   Haemophilus influenzae strain P615-8618     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 339123..349419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH576_RS01695 (CH576_01695) - 340441..340587 (-) 147 WP_240321233.1 ABC transporter -
  CH576_RS01700 (CH576_01700) - 340853..343802 (+) 2950 Protein_325 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor -
  CH576_RS09340 (CH576_01705) - 343909..344130 (+) 222 WP_038439526.1 type II toxin-antitoxin system RelE/ParE family toxin -
  CH576_RS01710 (CH576_01710) HI0659 344123..344419 (+) 297 WP_050829196.1 helix-turn-helix transcriptional regulator Machinery gene
  CH576_RS01715 (CH576_01715) - 344603..346519 (+) 1917 WP_116942002.1 ABC transporter ATP-binding protein -
  CH576_RS01720 (CH576_01720) - 346529..347065 (+) 537 WP_050837764.1 type I DNA topoisomerase -
  CH576_RS01725 (CH576_01725) - 347081..347632 (+) 552 WP_116942000.1 Sua5/YciO/YrdC/YwlC family protein -
  CH576_RS01730 (CH576_01730) aroE 347636..348442 (+) 807 WP_116941998.1 shikimate dehydrogenase -
  CH576_RS01735 (CH576_01735) - 348454..349212 (+) 759 WP_042601030.1 DUF3800 domain-containing protein -

Sequence


Protein


Download         Length: 98 a.a.        Molecular weight: 11121.00 Da        Isoelectric Point: 10.5623

>NTDB_id=310223 CH576_RS01710 WP_050829196.1 344123..344419(+) (HI0659) [Haemophilus influenzae strain P615-8618]
MNKISPLGSNWNEFEQQIFNEEEIRESNLRVALIKELITSRQRLGISQKQLETLSGVKQPMIARIEKGQTNPQLETLLKL
LAPLGKTLSIVPLRVKNA

Nucleotide


Download         Length: 297 bp        

>NTDB_id=310223 CH576_RS01710 WP_050829196.1 344123..344419(+) (HI0659) [Haemophilus influenzae strain P615-8618]
ATGAATAAAATCAGCCCATTAGGTTCAAATTGGAATGAGTTTGAACAGCAAATTTTCAATGAAGAAGAAATCCGCGAAAG
TAATTTGCGTGTAGCCTTAATTAAAGAATTGATTACTTCTCGCCAGCGACTTGGGATTTCCCAAAAACAACTTGAAACCT
TAAGCGGTGTGAAGCAACCTATGATTGCACGCATTGAAAAAGGACAAACGAATCCTCAGCTTGAAACGTTGTTAAAATTG
CTCGCTCCTTTAGGGAAAACCCTGTCGATTGTGCCTCTAAGGGTAAAAAATGCCTAA

Domains


Predicted by InterproScan.

(41-89)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

98.98

100

0.99


Multiple sequence alignment