Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | CH603_RS04045 | Genome accession | NZ_CP031686 |
| Coordinates | 774518..774967 (+) | Length | 149 a.a. |
| NCBI ID | WP_042593498.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain P642-4396 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 769518..779967
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CH603_RS04025 (CH603_04025) | rsmE | 769981..770718 (-) | 738 | WP_005654099.1 | 16S rRNA (uracil(1498)-N(3))-methyltransferase | - |
| CH603_RS04030 (CH603_04030) | lnt | 770768..772297 (-) | 1530 | WP_080317215.1 | apolipoprotein N-acyltransferase | - |
| CH603_RS04035 (CH603_04035) | corC | 772320..773219 (-) | 900 | WP_042593501.1 | CNNM family magnesium/cobalt transport protein CorC | - |
| CH603_RS04040 (CH603_04040) | ampD | 773852..774403 (-) | 552 | WP_042593499.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| CH603_RS04045 (CH603_04045) | pilA | 774518..774967 (+) | 450 | WP_042593498.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| CH603_RS04050 (CH603_04050) | pilB | 774964..776358 (+) | 1395 | WP_011271972.1 | GspE/PulE family protein | Machinery gene |
| CH603_RS04055 (CH603_04055) | pilC | 776355..777572 (+) | 1218 | WP_014550481.1 | type II secretion system F family protein | Machinery gene |
| CH603_RS04060 (CH603_04060) | pilD | 777569..778261 (+) | 693 | WP_014550482.1 | prepilin peptidase | Machinery gene |
| CH603_RS04065 (CH603_04065) | rho | 778315..779577 (-) | 1263 | WP_005648966.1 | transcription termination factor Rho | - |
Sequence
Protein
Download Length: 149 a.a. Molecular weight: 15464.84 Da Isoelectric Point: 8.7944
>NTDB_id=310061 CH603_RS04045 WP_042593498.1 774518..774967(+) (pilA) [Haemophilus influenzae strain P642-4396]
MKLTTQQTLKKGFTLIELMIVIAIIAILATIAIPSYQHYTKKAAVSELLQASAPYKADVELCVYSTGKPSSCSGGSNGIA
ADIKTAKGYVKSVTTSNGAITVKGDGTLANMEYILQATGNAATGVTWTTTCKGTDASLFPANFCGSVTQ
MKLTTQQTLKKGFTLIELMIVIAIIAILATIAIPSYQHYTKKAAVSELLQASAPYKADVELCVYSTGKPSSCSGGSNGIA
ADIKTAKGYVKSVTTSNGAITVKGDGTLANMEYILQATGNAATGVTWTTTCKGTDASLFPANFCGSVTQ
Nucleotide
Download Length: 450 bp
>NTDB_id=310061 CH603_RS04045 WP_042593498.1 774518..774967(+) (pilA) [Haemophilus influenzae strain P642-4396]
ATGAAACTAACAACACAGCAAACCTTGAAAAAAGGGTTTACATTAATAGAGCTAATGATTGTGATTGCAATTATTGCTAT
TTTAGCCACTATCGCAATTCCCTCTTATCAACATTATACTAAAAAAGCAGCGGTATCTGAATTACTGCAAGCGTCAGCGC
CTTATAAGGCTGATGTGGAATTATGTGTTTATAGCACAGGTAAACCTTCCAGTTGCTCGGGAGGAAGCAATGGAATTGCA
GCGGATATAAAGACAGCAAAAGGCTATGTAAAATCAGTGACAACAAGCAACGGTGCAATAACAGTAAAAGGGGATGGCAC
ATTGGCAAATATGGAATATATTTTGCAAGCTACAGGTAATGCTGCAACAGGTGTAACTTGGACAACAACTTGCAAAGGAA
CGGATGCCTCTTTATTTCCAGCAAATTTTTGCGGAAGTGTCACACAATGA
ATGAAACTAACAACACAGCAAACCTTGAAAAAAGGGTTTACATTAATAGAGCTAATGATTGTGATTGCAATTATTGCTAT
TTTAGCCACTATCGCAATTCCCTCTTATCAACATTATACTAAAAAAGCAGCGGTATCTGAATTACTGCAAGCGTCAGCGC
CTTATAAGGCTGATGTGGAATTATGTGTTTATAGCACAGGTAAACCTTCCAGTTGCTCGGGAGGAAGCAATGGAATTGCA
GCGGATATAAAGACAGCAAAAGGCTATGTAAAATCAGTGACAACAAGCAACGGTGCAATAACAGTAAAAGGGGATGGCAC
ATTGGCAAATATGGAATATATTTTGCAAGCTACAGGTAATGCTGCAACAGGTGTAACTTGGACAACAACTTGCAAAGGAA
CGGATGCCTCTTTATTTCCAGCAAATTTTTGCGGAAGTGTCACACAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Haemophilus influenzae 86-028NP |
93.96 |
100 |
0.94 |
| pilA | Haemophilus influenzae Rd KW20 |
88.591 |
100 |
0.886 |
| pilA | Glaesserella parasuis strain SC1401 |
56.376 |
100 |
0.564 |
| pilA2 | Legionella pneumophila str. Paris |
39.189 |
99.329 |
0.389 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
39.189 |
99.329 |
0.389 |
| pilA | Vibrio campbellii strain DS40M4 |
38.298 |
94.631 |
0.362 |