Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   CLH_RS16265 Genome accession   NC_010723
Coordinates   3643635..3644078 (-) Length   147 a.a.
NCBI ID   WP_003369942.1    Uniprot ID   A0A0C2N5G6
Organism   Clostridium botulinum E3 str. Alaska E43     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3638635..3649078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLH_RS16245 (CLH_3376) rplI 3640443..3640886 (-) 444 WP_012425064.1 50S ribosomal protein L9 -
  CLH_RS16250 (CLH_3377) - 3640889..3642829 (-) 1941 WP_003374727.1 DHH family phosphoesterase -
  CLH_RS16255 (CLH_3378) - 3642854..3643174 (-) 321 WP_003374679.1 MazG-like family protein -
  CLH_RS16260 (CLH_3379) rpsR 3643362..3643613 (-) 252 WP_003369777.1 30S ribosomal protein S18 -
  CLH_RS16265 (CLH_3380) ssbA 3643635..3644078 (-) 444 WP_003369942.1 single-stranded DNA-binding protein Machinery gene
  CLH_RS16270 (CLH_3381) rpsF 3644092..3644379 (-) 288 WP_026072100.1 30S ribosomal protein S6 -
  CLH_RS16275 (CLH_3382) - 3644489..3644680 (-) 192 WP_003373736.1 DUF951 domain-containing protein -
  CLH_RS16280 (CLH_3383) - 3644680..3645573 (-) 894 WP_012451521.1 mechanosensitive ion channel family protein -
  CLH_RS16285 (CLH_3384) - 3645601..3645840 (-) 240 WP_012450983.1 DUF3343 domain-containing protein -
  CLH_RS16290 (CLH_3385) - 3646242..3646895 (+) 654 WP_012451282.1 LysE family transporter -
  CLH_RS16295 (CLH_3386) - 3646911..3648068 (+) 1158 WP_012449527.1 aminotransferase class V-fold PLP-dependent enzyme -
  CLH_RS16300 (CLH_3387) yyaC 3648367..3648969 (+) 603 WP_003369076.1 spore protease YyaC -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 16065.78 Da        Isoelectric Point: 4.5882

>NTDB_id=30981 CLH_RS16265 WP_003369942.1 3643635..3644078(-) (ssbA) [Clostridium botulinum E3 str. Alaska E43]
MNKVVLIGRLTKDPELRFTPGAGTAVTTLTLAVDKYNSKSGQKEADFVPVVVWGKQAESTANYMSKGSQMAISGRIQTRN
YEAKDGTKRYVTEVVATEVQFLSKSNASGNVGTNYGNNTEYSSSNNPFDDMNFEEDITPVDDGDMPF

Nucleotide


Download         Length: 444 bp        

>NTDB_id=30981 CLH_RS16265 WP_003369942.1 3643635..3644078(-) (ssbA) [Clostridium botulinum E3 str. Alaska E43]
ATGAACAAAGTAGTTTTAATCGGAAGATTGACGAAAGATCCAGAACTAAGATTTACTCCTGGAGCTGGAACAGCAGTAAC
TACCTTAACATTAGCAGTTGATAAGTATAATTCTAAATCTGGTCAAAAAGAAGCGGACTTTGTACCTGTAGTTGTATGGG
GAAAACAAGCTGAAAGTACTGCGAATTACATGAGTAAGGGTAGCCAAATGGCTATAAGCGGTAGAATTCAAACCAGAAAT
TATGAAGCAAAAGATGGAACAAAGAGATATGTTACAGAAGTAGTTGCTACAGAAGTTCAATTTTTAAGTAAATCAAATGC
TTCAGGAAATGTTGGTACTAATTATGGTAACAACACTGAATATTCATCATCAAATAATCCATTTGATGATATGAACTTTG
AAGAAGACATAACTCCAGTAGATGATGGAGATATGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C2N5G6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

43.605

100

0.51
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.165

94.558

0.408
  ssbA Streptococcus mutans UA159

43.165

94.558

0.408
  ssb Latilactobacillus sakei subsp. sakei 23K

40.876

93.197

0.381
  ssbB Bacillus subtilis subsp. subtilis str. 168

53.398

70.068

0.374

Multiple sequence alignment