Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsE   Type   Machinery gene
Locus tag   A2J15_RS03815 Genome accession   NZ_CP031611
Coordinates   767881..769428 (-) Length   515 a.a.
NCBI ID   WP_066779519.1    Uniprot ID   -
Organism   Campylobacter hepaticus strain HV10     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 762881..774428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2J15_RS03800 (A2J15_003800) - 763040..763720 (+) 681 WP_066776453.1 hypothetical protein -
  A2J15_RS03805 (A2J15_003805) - 764077..766671 (+) 2595 WP_116980485.1 autotransporter outer membrane beta-barrel domain-containing protein -
  A2J15_RS03810 (A2J15_003810) ctsF 766706..767884 (-) 1179 WP_066779515.1 type II secretion system F family protein Machinery gene
  A2J15_RS03815 (A2J15_003815) ctsE 767881..769428 (-) 1548 WP_066779519.1 GspE/PulE family protein Machinery gene
  A2J15_RS03820 (A2J15_003820) ctsX 769430..770005 (-) 576 WP_066779512.1 transformation system protein Machinery gene
  A2J15_RS03825 (A2J15_003825) ctsP 770009..770617 (-) 609 WP_066779509.1 ATP-binding protein Machinery gene
  A2J15_RS03830 (A2J15_003830) ctsD 770610..772028 (-) 1419 WP_066779506.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  A2J15_RS03835 (A2J15_003835) ctsR 772006..772302 (-) 297 WP_066779503.1 transformation system protein Machinery gene

Sequence

Protein


Download         Length: 515 a.a.        Molecular weight: 59333.01 Da        Isoelectric Point: 6.2570

>NTDB_id=307931 A2J15_RS03815 WP_066779519.1 767881..769428(-) (ctsE) [Campylobacter hepaticus strain HV10]
MEAIFQAYINDNMSLDQICKQCSCSVDEFFQKLAHFYKIDFIDLDQYDHFIYENMPFSLFEKFRFLLIENANGFLIVRSK
PCSLELLEQVKNFVFCENMSMVIANELKITKILNQIRIQEKMSKLSTKLRLEWQEKEKKDDQSCISQIFDFLLNEILPFN
ASDMHIEARADDALIRFRVDGILHQLLECQKDVYEALVFYIKFLACLNLAESRKAQDGSFTLDFKNEKYDFRVSCLPLIY
GESIVIRILKHNKAILELNKLNLGDKNLQIVKNTLKRSHGMILLTGPTGSGKSTTLYACLNALKSIEKKIISVEDPIEYK
MPLVQQILLNSKAGVEFNNILRAILRQDPDIIMIGEIRDEESLDIALKASLTGHLLLSTLHTNDAFSTIDRLLDMKAKAY
LIASALSLIIAQRLVRKLCPWCKQESQKSYAEFQGDFFEAKGCEYCHYSGFYGRELIAECLSIDEELSCAIRENKDKKTL
IELAKKQGFTSMFEQGLQKAKEGITSIDELFRLVR

Nucleotide


Download         Length: 1548 bp        

>NTDB_id=307931 A2J15_RS03815 WP_066779519.1 767881..769428(-) (ctsE) [Campylobacter hepaticus strain HV10]
ATGGAAGCAATTTTTCAAGCTTATATTAATGATAACATGAGTCTTGATCAAATTTGTAAGCAATGCTCTTGTAGTGTGGA
TGAATTTTTTCAAAAATTAGCCCATTTTTATAAGATTGATTTTATAGATTTAGATCAGTATGATCATTTTATTTATGAGA
ATATGCCCTTTTCTTTATTTGAAAAATTTAGATTTTTACTGATTGAAAATGCGAATGGGTTTTTAATCGTTAGGTCTAAA
CCTTGTTCTTTAGAACTCTTAGAACAAGTTAAAAATTTTGTATTTTGTGAAAATATGAGTATGGTTATTGCCAATGAGTT
AAAAATTACTAAAATTTTAAATCAAATTCGTATACAAGAAAAAATGAGTAAATTAAGCACTAAACTCAGGCTTGAGTGGC
AAGAAAAAGAAAAAAAAGATGATCAAAGTTGCATTAGTCAAATTTTTGATTTTTTACTCAATGAAATTTTACCTTTTAAT
GCTAGCGATATGCATATAGAAGCAAGAGCTGATGATGCTTTAATTAGATTTAGGGTTGATGGTATTTTGCATCAATTGCT
TGAGTGTCAAAAAGATGTTTATGAGGCTTTAGTTTTTTATATCAAATTTTTAGCTTGTTTAAATTTAGCCGAATCAAGAA
AGGCACAAGATGGGAGTTTTACATTAGATTTTAAAAATGAAAAATATGATTTTCGTGTTTCATGCTTGCCTTTGATTTAT
GGAGAGAGTATTGTAATAAGAATTTTAAAACACAATAAAGCAATTTTAGAATTAAACAAATTGAATTTGGGAGATAAGAA
TTTACAAATTGTCAAAAATACCCTAAAACGTTCCCATGGAATGATTTTATTAACAGGTCCTACAGGAAGTGGTAAAAGTA
CAACCTTATATGCTTGTTTAAATGCATTAAAAAGTATAGAGAAAAAAATTATTTCCGTAGAAGATCCTATAGAGTATAAA
ATGCCTTTAGTCCAACAAATTTTGCTTAATTCTAAAGCCGGGGTTGAATTTAATAATATCTTAAGAGCAATTTTAAGACA
GGATCCAGATATCATTATGATAGGGGAAATTCGTGACGAAGAAAGTCTTGATATAGCTTTAAAAGCATCTTTAACAGGAC
ATTTACTTTTAAGTACCTTGCATACTAATGATGCTTTTTCTACTATTGATAGGCTTTTGGATATGAAGGCAAAAGCTTAT
TTAATAGCTTCAGCCTTAAGTCTTATCATAGCCCAACGTTTAGTTAGAAAACTTTGTCCTTGGTGCAAGCAAGAAAGTCA
AAAATCTTATGCAGAATTTCAAGGAGATTTTTTTGAGGCTAAAGGATGTGAGTATTGTCATTATAGTGGATTTTATGGGA
GAGAATTGATTGCTGAGTGTTTAAGCATTGATGAAGAACTATCTTGTGCTATAAGGGAAAATAAGGATAAAAAAACCCTA
ATCGAACTTGCTAAAAAACAAGGTTTTACAAGTATGTTTGAACAAGGTTTGCAAAAAGCTAAAGAAGGTATTACTAGTAT
AGATGAACTTTTTAGGCTTGTAAGATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(154-417)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsE Campylobacter jejuni subsp. jejuni 81-176

76.311

100

0.763

Multiple sequence alignment