Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   A2J15_RS03835 Genome accession   NZ_CP031611
Coordinates   772006..772302 (-) Length   98 a.a.
NCBI ID   WP_066779503.1    Uniprot ID   A0A424Z0F6
Organism   Campylobacter hepaticus strain HV10     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 767006..777302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2J15_RS03815 (A2J15_003815) ctsE 767881..769428 (-) 1548 WP_066779519.1 GspE/PulE family protein Machinery gene
  A2J15_RS03820 (A2J15_003820) ctsX 769430..770005 (-) 576 WP_066779512.1 transformation system protein Machinery gene
  A2J15_RS03825 (A2J15_003825) ctsP 770009..770617 (-) 609 WP_066779509.1 ATP-binding protein Machinery gene
  A2J15_RS03830 (A2J15_003830) ctsD 770610..772028 (-) 1419 WP_066779506.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  A2J15_RS03835 (A2J15_003835) ctsR 772006..772302 (-) 297 WP_066779503.1 transformation system protein Machinery gene
  A2J15_RS03840 (A2J15_003840) nifJ 772323..775883 (-) 3561 WP_066779501.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  A2J15_RS03845 (A2J15_003845) - 775968..776612 (-) 645 WP_066779498.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 11583.45 Da        Isoelectric Point: 6.3429

>NTDB_id=307935 A2J15_RS03835 WP_066779503.1 772006..772302(-) (ctsR) [Campylobacter hepaticus strain HV10]
MLFFSFLIAQNDFEDKKKYTDFLKLQNPFINPTFEKLQAIKISAIMFDRVKIDDKWYKKGDSIDEAIISKIDTQEIKIQY
DNLEFVIPINKNGKISIN

Nucleotide


Download         Length: 297 bp        

>NTDB_id=307935 A2J15_RS03835 WP_066779503.1 772006..772302(-) (ctsR) [Campylobacter hepaticus strain HV10]
ATCTTATTTTTTAGCTTTTTAATAGCACAAAATGATTTTGAAGATAAGAAAAAATATACAGATTTTCTTAAGCTTCAAAA
TCCCTTCATAAACCCCACTTTTGAAAAATTACAAGCAATTAAAATTAGTGCTATCATGTTTGATAGAGTAAAAATAGATG
ATAAATGGTATAAAAAAGGTGATAGTATTGATGAAGCTATCATTAGCAAGATAGATACTCAAGAAATTAAAATACAATAT
GATAATTTAGAATTTGTTATTCCAATAAATAAAAATGGTAAGATTAGTATTAATTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A424Z0F6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

62.136

100

0.653

Multiple sequence alignment