Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AB849_RS12475 Genome accession   NZ_CP036487
Coordinates   2442978..2444684 (-) Length   568 a.a.
NCBI ID   WP_049719949.1    Uniprot ID   -
Organism   Thermoactinomyces vulgaris strain CDF     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2437978..2449684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB849_RS12455 (AB849_012455) - 2438669..2439496 (+) 828 WP_131470938.1 hypothetical protein -
  AB849_RS12460 (AB849_012460) - 2439515..2440195 (+) 681 WP_049719951.1 hypothetical protein -
  AB849_RS12465 (AB849_012465) - 2440371..2440883 (+) 513 WP_049719950.1 M57 family metalloprotease -
  AB849_RS12470 (AB849_012470) spoIVB 2441255..2442796 (-) 1542 WP_386089823.1 SpoIVB peptidase -
  AB849_RS12475 (AB849_012475) recN 2442978..2444684 (-) 1707 WP_049719949.1 DNA repair protein RecN Machinery gene
  AB849_RS12480 (AB849_012480) ahrC 2444698..2445147 (-) 450 WP_049719948.1 transcriptional regulator AhrC/ArgR -
  AB849_RS12485 (AB849_012485) - 2445125..2446027 (-) 903 WP_049719947.1 NAD(+)/NADH kinase -
  AB849_RS12490 (AB849_012490) - 2446057..2446572 (-) 516 WP_049719946.1 hypothetical protein -
  AB849_RS12495 (AB849_012495) - 2446632..2447444 (-) 813 WP_037993838.1 TlyA family RNA methyltransferase -
  AB849_RS12500 (AB849_012500) dxs 2447454..2449343 (-) 1890 WP_037993843.1 1-deoxy-D-xylulose-5-phosphate synthase -

Sequence

Protein


Download         Length: 568 a.a.        Molecular weight: 64824.49 Da        Isoelectric Point: 5.1786

>NTDB_id=307935 AB849_RS12475 WP_049719949.1 2442978..2444684(-) (recN) [Thermoactinomyces vulgaris strain CDF]
MLKELVIRHFAIIEEVHIAFDHGFHVLTGETGAGKSILIDALGLVAGGRASADFVRHGEGKAEIEAVFELDQEHAARAPL
VEWGFDEEELDQIIIRREITAQGKSTCRINGRVVTLSLLKQVGPRLIDISGQHEHQSLLKTEEHLEWLDHFGGEEILSLR
RQYEEIYVSYDKVKRQLEQFRKNQRDLDRRLDLLRFQADEIEAAQLTPGEEEALESEHKRLASAEKLMVHSAKAYEYLNG
EQGGISLVQEAISHLSQISEVDEFLENVAELARSACYQLEEAAIEIARYQDSFEFDPKRLYEVEERIHLIHQLKRKYGDS
IEEILAYKEQVDQELHELENHEEIEAELSAKCRQYAEQLKELAQKLTSKRKKAASALETRVEQELKDLNMGSTVFHVAFF
PEPYRHDVFYAHGQDQIEFQIAPNPGEPLKPLAKIASGGELSRLMLALKCIFTEVNRNDTLVFDEIDTGVSGRAAQAIAE
KIAFLSNRHQVLCVTHLPQVACMADCHMYIAKEVLQSKTRTKVEKLDMEGRTVELARMLGGVEVTSTTRNHAREMIRLAE
EQKKQYVR

Nucleotide


Download         Length: 1707 bp        

>NTDB_id=307935 AB849_RS12475 WP_049719949.1 2442978..2444684(-) (recN) [Thermoactinomyces vulgaris strain CDF]
ATGCTGAAGGAACTCGTTATTCGCCACTTTGCCATCATTGAAGAGGTGCATATCGCATTTGACCATGGGTTTCATGTGTT
AACAGGCGAAACGGGCGCCGGGAAATCCATCTTGATTGATGCTCTGGGCTTGGTTGCCGGCGGCAGGGCATCTGCGGATT
TTGTCCGCCATGGAGAAGGAAAAGCCGAAATCGAAGCGGTGTTTGAACTGGATCAAGAGCATGCTGCACGGGCTCCGCTG
GTGGAGTGGGGATTTGATGAGGAAGAGTTGGATCAAATCATCATCCGCAGAGAGATCACTGCGCAAGGGAAAAGCACCTG
CCGGATCAATGGAAGAGTGGTCACGCTGTCCTTGCTCAAACAAGTCGGACCCCGTTTGATTGACATCTCCGGACAGCACG
AGCACCAATCATTGCTGAAAACGGAGGAACATTTGGAGTGGCTGGACCATTTCGGCGGCGAGGAAATTCTTTCATTGCGC
CGGCAATATGAAGAGATATATGTTTCTTACGATAAAGTAAAGCGCCAATTGGAACAATTTCGAAAAAATCAGAGGGATTT
GGACCGGCGTTTGGATTTGCTCCGTTTTCAGGCCGATGAAATTGAAGCAGCTCAGTTGACCCCCGGGGAAGAAGAAGCTT
TGGAATCGGAACACAAACGTTTGGCTTCCGCCGAGAAACTGATGGTCCACAGTGCGAAGGCATATGAATACTTAAACGGT
GAACAGGGAGGCATCAGCCTCGTGCAGGAGGCGATATCCCATTTAAGCCAGATTTCCGAAGTGGACGAGTTTTTGGAAAA
TGTGGCGGAACTGGCCCGGTCGGCCTGTTACCAACTGGAAGAAGCGGCAATTGAAATTGCCCGCTATCAGGACAGTTTTG
AGTTCGATCCCAAACGCCTTTACGAGGTGGAAGAAAGAATCCATTTGATTCACCAATTAAAACGCAAATATGGGGACAGC
ATTGAAGAGATTTTGGCTTATAAAGAACAAGTGGACCAAGAACTGCATGAGCTCGAAAATCATGAGGAAATTGAAGCGGA
ACTCAGCGCAAAATGCCGCCAATATGCGGAGCAATTGAAAGAATTGGCGCAAAAGCTCACATCGAAACGGAAAAAAGCCG
CATCTGCATTGGAAACCAGAGTGGAGCAGGAATTGAAGGATTTAAATATGGGGTCGACCGTTTTTCACGTCGCCTTTTTT
CCGGAGCCTTACCGCCATGACGTTTTTTATGCTCACGGGCAGGATCAAATTGAGTTTCAAATTGCCCCCAACCCTGGCGA
ACCGTTAAAGCCGCTTGCCAAAATTGCATCCGGGGGAGAATTGTCCCGGTTGATGCTGGCGCTCAAATGTATTTTTACCG
AAGTGAACCGGAATGATACATTGGTCTTTGACGAGATTGACACGGGAGTGAGCGGCCGCGCAGCGCAAGCCATTGCGGAA
AAAATTGCGTTTTTGTCGAACAGGCATCAAGTCCTGTGCGTGACTCATTTGCCCCAAGTGGCTTGTATGGCGGACTGCCA
TATGTACATTGCAAAAGAAGTATTGCAATCCAAGACAAGGACAAAAGTGGAGAAGCTGGACATGGAAGGTCGCACGGTTG
AATTGGCGCGCATGCTAGGCGGCGTGGAAGTGACCAGTACGACCCGGAATCACGCCCGGGAAATGATCCGGCTGGCTGAA
GAACAAAAGAAACAATATGTGAGGTGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.683

100

0.431

Multiple sequence alignment