Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   A2J15_RS03825 Genome accession   NZ_CP031611
Coordinates   770009..770617 (-) Length   202 a.a.
NCBI ID   WP_066779509.1    Uniprot ID   A0A424Z0T2
Organism   Campylobacter hepaticus strain HV10     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 765009..775617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2J15_RS03810 (A2J15_003810) ctsF 766706..767884 (-) 1179 WP_066779515.1 type II secretion system F family protein Machinery gene
  A2J15_RS03815 (A2J15_003815) ctsE 767881..769428 (-) 1548 WP_066779519.1 GspE/PulE family protein Machinery gene
  A2J15_RS03820 (A2J15_003820) ctsX 769430..770005 (-) 576 WP_066779512.1 transformation system protein Machinery gene
  A2J15_RS03825 (A2J15_003825) ctsP 770009..770617 (-) 609 WP_066779509.1 ATP-binding protein Machinery gene
  A2J15_RS03830 (A2J15_003830) ctsD 770610..772028 (-) 1419 WP_066779506.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  A2J15_RS03835 (A2J15_003835) ctsR 772006..772302 (-) 297 WP_066779503.1 transformation system protein Machinery gene

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23952.37 Da        Isoelectric Point: 10.1253

>NTDB_id=307933 A2J15_RS03825 WP_066779509.1 770009..770617(-) (ctsP) [Campylobacter hepaticus strain HV10]
MNKIIPFREAIFHQMDKILSNNRALIFLWGKSGCGKSVLLQRLAKKYQIDFIHEMFKDEIFLKEKIEFLKHKGQKLIILD
EVGKYNHDMLENIRIYSDTMSFVLASHKYLNLFKKEYFKSRLSASFELKKPDLKELDDYIKLKFGLSFSTSCLKILKKIA
KGNLRYLDKTLKTFCEINIYFDKNKTQEYILKLSALENGLLR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=307933 A2J15_RS03825 WP_066779509.1 770009..770617(-) (ctsP) [Campylobacter hepaticus strain HV10]
ATGAATAAGATCATTCCTTTTAGAGAAGCAATTTTTCATCAAATGGATAAGATTTTATCAAATAATAGGGCTTTGATTTT
TTTATGGGGAAAAAGTGGGTGTGGAAAAAGTGTATTGTTGCAAAGATTAGCAAAAAAATATCAAATTGATTTTATTCATG
AAATGTTTAAAGATGAGATTTTTTTAAAAGAAAAAATAGAGTTTTTAAAGCATAAAGGACAAAAATTAATTATTTTAGAT
GAAGTAGGAAAATATAACCACGATATGTTAGAAAATATTAGAATTTATAGTGATACTATGAGTTTTGTTTTAGCTTCACA
TAAGTATTTAAATCTTTTTAAAAAAGAATATTTTAAAAGTCGTTTAAGCGCATCTTTTGAACTTAAAAAACCTGATCTTA
AAGAACTTGATGATTATATTAAATTAAAATTTGGGCTTAGTTTTTCAACATCATGTCTTAAAATTTTAAAAAAAATTGCT
AAGGGGAATTTAAGATATTTAGATAAGACTTTAAAGACTTTTTGTGAGATTAATATTTATTTTGATAAAAATAAAACTCA
AGAATATATTTTAAAACTTAGTGCTTTAGAAAACGGTTTATTAAGGTAG

Domains

Predicted by InterproScan.

RNA helicase (RNA_helicase)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A424Z0T2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

73.762

100

0.738

Multiple sequence alignment