Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   AB849_RS12440 Genome accession   NZ_CP036487
Coordinates   2434441..2435241 (-) Length   266 a.a.
NCBI ID   WP_037993823.1    Uniprot ID   A0ABS0QEL3
Organism   Thermoactinomyces vulgaris strain CDF     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2429441..2440241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB849_RS12415 (AB849_012415) - 2429864..2430124 (+) 261 WP_049719957.1 DUF2627 domain-containing protein -
  AB849_RS12420 (AB849_012420) - 2430200..2432338 (-) 2139 WP_049719956.1 MMPL family transporter -
  AB849_RS12425 (AB849_012425) - 2432470..2433036 (-) 567 WP_049719955.1 TetR/AcrR family transcriptional regulator -
  AB849_RS12430 (AB849_012430) - 2433212..2434153 (+) 942 WP_232335409.1 superoxide dismutase -
  AB849_RS12435 (AB849_012435) - 2434171..2434410 (+) 240 WP_037993821.1 hypothetical protein -
  AB849_RS12440 (AB849_012440) spo0A 2434441..2435241 (-) 801 WP_037993823.1 sporulation transcription factor Spo0A Regulator
  AB849_RS13365 - 2435432..2435569 (+) 138 WP_156473318.1 hypothetical protein -
  AB849_RS12445 (AB849_012445) gltP 2435794..2437065 (+) 1272 WP_049719954.1 glutamate/aspartate:proton symporter GltP -
  AB849_RS12450 (AB849_012450) - 2437564..2438643 (+) 1080 WP_049719953.1 hypothetical protein -
  AB849_RS12455 (AB849_012455) - 2438669..2439496 (+) 828 WP_131470938.1 hypothetical protein -
  AB849_RS12460 (AB849_012460) - 2439515..2440195 (+) 681 WP_049719951.1 hypothetical protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29597.30 Da        Isoelectric Point: 7.0407

>NTDB_id=307934 AB849_RS12440 WP_037993823.1 2434441..2435241(-) (spo0A) [Thermoactinomyces vulgaris strain CDF]
MNKIRVILADDNREFADLLKEHLNGQGDIEVIGVAHHGGEVIEMLKQEIPDVLILDIIMPHLDGLGVLEQLQQMDLEFDP
KVIMLTAFGQENITHRAVELGASYYILKPFDLDVLTHRIRQMKGIASKPALVKSGSSVPSGKAASGQKANNLDANITNVI
HEIGVPAHIKGYLYLREAISMVYNEVELLGAITKSLYPRIAKKYNTTPSRVERAIRHAIEVAWSRGNMDSIRELFGYTIN
VTKAKPTNSEFIAMVADKLRIEHKVG

Nucleotide


Download         Length: 801 bp        

>NTDB_id=307934 AB849_RS12440 WP_037993823.1 2434441..2435241(-) (spo0A) [Thermoactinomyces vulgaris strain CDF]
TTGAATAAAATCCGAGTGATCCTAGCGGATGATAATCGGGAATTTGCCGATTTGCTTAAAGAACATTTGAACGGGCAGGG
AGATATTGAAGTGATCGGTGTGGCCCACCACGGGGGCGAGGTCATTGAAATGTTAAAACAGGAAATTCCCGATGTTTTGA
TCCTGGATATTATCATGCCTCATCTGGACGGGCTTGGCGTATTGGAACAGCTCCAGCAAATGGATCTGGAGTTTGATCCG
AAAGTGATCATGCTCACGGCATTCGGCCAGGAAAACATCACGCACCGGGCCGTGGAACTGGGAGCTTCCTATTACATATT
AAAGCCGTTTGATCTGGATGTGTTGACCCACCGGATCCGGCAGATGAAAGGCATTGCTTCCAAGCCGGCATTGGTGAAAT
CCGGCTCTTCCGTCCCGTCGGGAAAAGCGGCCTCCGGACAAAAAGCCAATAATTTGGATGCCAATATCACCAACGTGATT
CATGAGATCGGTGTCCCGGCCCATATCAAGGGGTATCTGTATCTGCGTGAAGCCATTTCCATGGTTTACAATGAGGTGGA
GTTACTCGGAGCGATCACCAAGTCGCTGTATCCCCGGATTGCCAAAAAATACAACACGACTCCGAGCCGTGTGGAACGGG
CGATCCGCCATGCGATCGAAGTGGCTTGGAGCCGTGGGAATATGGATTCCATCCGGGAGCTGTTCGGTTATACAATTAAC
GTAACCAAAGCAAAACCGACAAACAGTGAATTTATCGCGATGGTTGCCGATAAATTACGCATTGAACATAAAGTCGGGTA
A

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-120)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

67.17

99.624

0.669

Multiple sequence alignment