Detailed information NTG0307934

Bioinformatically predicted

Overview

• Name: ctsD
• Type: Machinery gene
• Locus tag: A2J15_RS03830
• Genome accession: NZ_CP031611
• Coordinates: 770610..772028 (-)
• Length: 472 a.a.
• NCBI ID: WP_066779506.1
• Uniprot ID: A0A6A7JSY7
• Organism: Campylobacter hepaticus strain HV10
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 765610..777028

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A2J15_RS03810 (A2J15_003810)	ctsF	766706..767884 (-)	1179	WP_066779515.1	type II secretion system F family protein	Machinery gene
A2J15_RS03815 (A2J15_003815)	ctsE	767881..769428 (-)	1548	WP_066779519.1	GspE/PulE family protein	Machinery gene
A2J15_RS03820 (A2J15_003820)	ctsX	769430..770005 (-)	576	WP_066779512.1	transformation system protein	Machinery gene
A2J15_RS03825 (A2J15_003825)	ctsP	770009..770617 (-)	609	WP_066779509.1	ATP-binding protein	Machinery gene
A2J15_RS03830 (A2J15_003830)	ctsD	770610..772028 (-)	1419	WP_066779506.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
A2J15_RS03835 (A2J15_003835)	ctsR	772006..772302 (-)	297	WP_066779503.1	transformation system protein	Machinery gene
A2J15_RS03840 (A2J15_003840)	nifJ	772323..775883 (-)	3561	WP_066779501.1	pyruvate:ferredoxin (flavodoxin) oxidoreductase	-
A2J15_RS03845 (A2J15_003845)	-	775968..776612 (-)	645	WP_066779498.1	HAD family hydrolase	-

Sequence

Protein

• Length: 472 a.a.
• Molecular weight: 53597.08 Da
• Isoelectric Point: 7.1833

>NTDB_id=307934 A2J15_RS03830 WP_066779506.1 770610..772028(-) (ctsD) [Campylobacter hepaticus strain HV10]
MVRLVLISCLFCCHHLFAIDCQKRLFDISINEKVSIQESLDELARYCSFSIIVKDKIAKAKLENLQNSVNIHQMSLDEIF
NFFIKEHDLDYDFDGKILRIVGIDTKIFKISYITSVREGQSITKASVDSKPRQSEYGGGFNDMEDNMIKSMEKFDFWQNI
EKEITTLLKNSHENYEFKPPIINSNAGLIIVTGTNSQLQSVKNYLQKLENRLKKQVIIDVSILAVNLNQSHSSGINWQNF
NIDFHSQTSKNENSFIQIQNGQGFVKNLGLRANLNFDSVINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKES
SKGNENGVIISESYNNYSVFIGILLNILPEISDDGKITLRINPSLSDFKYPQDNKRQKEPRNIAPDTVQKKLSSVVRMEN
NQTLILGGLISHDKTNDNNAVNILSKLPIFGPLFRSENVRSNTTEIVFIITPSIVDYAHLPSLKDLGFKYYE

Nucleotide

• Length: 1419 bp

>NTDB_id=307934 A2J15_RS03830 WP_066779506.1 770610..772028(-) (ctsD) [Campylobacter hepaticus strain HV10]
ATGGTAAGATTAGTATTAATTAGTTGTTTGTTTTGTTGTCATCATCTTTTTGCAATAGATTGTCAAAAACGCCTTTTTGA
TATTAGCATTAATGAGAAAGTAAGCATACAAGAAAGTCTTGATGAATTAGCAAGATATTGTTCTTTTAGCATTATTGTTA
AGGATAAAATTGCTAAAGCAAAACTAGAAAATCTCCAAAATTCTGTTAATATCCATCAAATGAGTCTTGATGAAATTTTT
AATTTTTTCATTAAGGAACATGATCTTGATTATGATTTTGATGGAAAAATTTTAAGAATTGTAGGTATAGATACAAAGAT
TTTTAAAATAAGTTATATTACTTCTGTTAGAGAGGGTCAAAGCATTACTAAAGCTTCTGTAGATTCAAAACCAAGACAAA
GTGAATATGGGGGAGGTTTTAATGATATGGAAGATAATATGATTAAAAGTATGGAGAAATTTGATTTTTGGCAAAATATA
GAAAAAGAGATTACTACATTATTGAAAAATTCTCATGAAAATTATGAGTTTAAACCCCCAATCATCAATTCTAATGCAGG
TCTTATTATCGTTACGGGGACAAATTCACAACTTCAAAGTGTTAAAAATTATTTACAAAAATTAGAAAATCGTCTTAAAA
AACAAGTTATTATTGATGTGAGTATACTTGCTGTTAATCTTAATCAAAGTCATTCTAGCGGGATTAATTGGCAAAATTTT
AATATAGATTTTCATTCTCAAACAAGTAAGAATGAAAATTCTTTTATACAAATTCAAAATGGTCAGGGTTTTGTTAAAAA
TTTAGGTTTAAGGGCAAATTTAAATTTTGATTCTGTTATTAATTTTCTTTCTCAAAATGGTAAAACCAGTGTGCTTTCTA
ATCCAAAACTTATGGCTTTAAACAATCAACAAGCAATTATTTCTGTAGGAGATACCATAAATTATCAAGTTAAAGAAAGT
TCTAAAGGGAATGAAAATGGTGTAATTATTAGTGAAAGTTATAATAATTATTCAGTTTTTATAGGTATTTTGCTTAATAT
CTTGCCTGAGATTTCTGATGATGGTAAGATTACATTAAGAATTAATCCAAGTTTGAGTGATTTTAAATACCCACAGGATA
ATAAAAGACAAAAAGAACCCCGTAACATTGCCCCTGATACTGTGCAAAAAAAGCTTTCTAGTGTAGTGCGTATGGAAAAT
AATCAAACTTTGATTTTAGGTGGACTTATTTCTCATGATAAAACTAATGATAATAATGCTGTAAATATTTTATCAAAACT
TCCTATTTTTGGACCCCTTTTTAGGAGTGAGAATGTGCGTTCTAATACCACTGAGATTGTTTTTATCATCACTCCGAGTA
TAGTTGATTATGCTCATTTACCCAGTCTTAAAGATTTAGGATTTAAATATTATGAATAA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (283-456)

3D structure

• AlphaFold DB: A0A6A7JSY7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsD	Campylobacter jejuni subsp. jejuni 81-176	84.746	100	0.847