Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   DNI88_RS09140 Genome accession   NZ_CP031561
Coordinates   1878899..1880395 (-) Length   498 a.a.
NCBI ID   WP_202995127.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain AP20     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1873899..1885395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DNI88_RS09130 (DNI88_09140) - 1875291..1877168 (-) 1878 WP_105503121.1 ABC-F family ATP-binding cassette domain-containing protein -
  DNI88_RS09135 (DNI88_09145) - 1877280..1878095 (+) 816 WP_015728742.1 ZIP family metal transporter -
  DNI88_RS13570 comA 1878352..1878867 (-) 516 WP_202995125.1 ATP-binding cassette domain-containing protein Regulator
  DNI88_RS09140 (DNI88_09150) comA 1878899..1880395 (-) 1497 WP_202995127.1 peptide cleavage/export ABC transporter Regulator
  DNI88_RS13575 - 1880319..1880510 (-) 192 WP_197737724.1 cysteine peptidase family C39 domain-containing protein -
  DNI88_RS09145 (DNI88_09160) - 1880885..1881193 (-) 309 WP_063284913.1 DUF3884 family protein -
  DNI88_RS09150 (DNI88_09165) - 1881268..1882398 (-) 1131 WP_159306489.1 glycosyltransferase -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 57647.56 Da        Isoelectric Point: 9.8980

>NTDB_id=307667 DNI88_RS09140 WP_202995127.1 1878899..1880395(-) (comA) [Staphylococcus pseudintermedius strain AP20]
MDFLRRKLRTTVNGTTAYGLVQVADKLGFETVPIKADIYLFEIDDLQYPFIVHVKKNNNHFHYYVVIRCDKKYIYIADPV
VNLTKMTYREFKEEWTGVTILLKPTSLYKPIKQDKVRLTYFIPLLLKEKRLIIKIIIISILVNMINILGSYFMKSIIDFY
IPQKLKTWVSMISMALIASYIMQQILSYLQKYFLILLVKTYSINILSPYIKHLFRLPITFFETGRAGDILSRLNDANSIT
DALASTMLSLFLDVTIIVGISIFLYYQSTILFVLILIIIPIYAVIVFGFMNSFERKRIKSMEANATLSSYLMENITGMET
IKALTCEKKCYKQIKYNFSNYYEKTFLLNKLNIKQNVLKKVVQLILNVSILWVGANLVIDNQISIGTLLVFNSLMIYFMN
PIENIMNLQLKLQIAGVANNRLNEIFTVKSEFEKNKLDIKLNQNSSKLIFSNISYGYVYEKEILTDINITIEHNSKVAFI
GESGSGKTTLAKLMVSFF

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=307667 DNI88_RS09140 WP_202995127.1 1878899..1880395(-) (comA) [Staphylococcus pseudintermedius strain AP20]
TTGGATTTTCTGAGAAGAAAGTTAAGAACAACAGTAAATGGCACTACAGCATATGGTTTGGTTCAGGTAGCAGATAAGTT
AGGTTTTGAGACAGTTCCTATTAAAGCAGATATATATTTGTTTGAAATTGATGATTTACAGTATCCTTTTATCGTTCATG
TTAAAAAAAATAACAATCATTTTCACTATTATGTTGTAATTAGATGTGATAAAAAGTATATCTATATAGCTGACCCTGTT
GTTAATTTAACAAAGATGACTTATAGGGAATTTAAAGAAGAGTGGACTGGAGTTACAATCTTATTAAAACCTACATCTTT
ATATAAGCCTATAAAGCAAGATAAAGTTCGTTTAACTTATTTTATACCTTTATTATTAAAAGAAAAAAGATTGATTATAA
AAATAATAATCATTTCCATTTTAGTCAATATGATAAATATTTTAGGTTCATATTTTATGAAGTCAATTATTGATTTTTAT
ATTCCCCAAAAGTTAAAAACATGGGTTAGTATGATTTCCATGGCTTTAATTGCTTCTTACATTATGCAACAAATTCTTAG
TTATTTGCAGAAATATTTTTTGATTTTATTAGTAAAGACATATTCTATAAATATACTTTCACCATACATTAAACATTTGT
TTAGATTACCTATTACTTTTTTTGAAACGGGAAGAGCAGGAGACATACTATCAAGACTTAATGATGCAAATTCAATTACT
GATGCTTTAGCTAGTACCATGCTATCATTGTTTTTAGATGTTACAATAATAGTTGGCATATCTATCTTCCTGTATTATCA
AAGTACTATTTTATTTGTATTAATATTAATTATCATTCCTATTTATGCCGTAATTGTTTTTGGTTTTATGAACTCTTTTG
AACGGAAAAGAATAAAATCTATGGAGGCAAATGCTACTTTGTCTTCTTATTTGATGGAAAATATAACAGGTATGGAGACG
ATAAAAGCACTGACATGTGAAAAGAAATGCTATAAGCAGATAAAATATAATTTTTCGAATTATTACGAAAAAACATTCTT
GTTAAACAAACTAAATATAAAGCAAAACGTTTTGAAAAAGGTTGTTCAATTAATATTAAATGTATCGATTTTATGGGTAG
GCGCTAACCTAGTTATAGATAATCAAATCTCAATTGGAACTTTGCTTGTTTTTAATTCATTAATGATTTACTTTATGAAT
CCAATAGAAAATATTATGAATTTACAGCTTAAATTACAAATAGCAGGTGTGGCTAATAATCGATTGAATGAAATATTCAC
AGTTAAATCAGAATTTGAAAAGAATAAATTGGATATCAAATTGAACCAAAACTCAAGTAAACTTATATTTTCAAATATTT
CATATGGATATGTGTACGAAAAAGAAATCCTTACAGATATTAATATAACAATAGAACATAATAGTAAAGTAGCCTTTATT
GGAGAGTCTGGATCAGGTAAAACAACTTTGGCGAAATTGATGGTTAGTTTTTTTTGA

Domains

Predicted by InterproScan.

Peptidase C39 family (Peptidase_C39)

(2-105)

ABC transporter transmembrane region (ABC_membrane)

(133-401)

ABC transporter (ABC_tran)

(464-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis NCTC 12261

51.509

99.799

0.514
  comA Streptococcus mitis SK321

51.308

99.799

0.512
  comA Streptococcus pneumoniae R6

51.107

99.799

0.51
  comA Streptococcus pneumoniae TIGR4

51.107

99.799

0.51
  comA Streptococcus gordonii str. Challis substr. CH1

51.107

99.799

0.51
  comA Streptococcus pneumoniae Rx1

51.107

99.799

0.51
  comA Streptococcus pneumoniae D39

51.107

99.799

0.51
  comA/nlmT Streptococcus mutans UA159

48.703

100

0.49

Multiple sequence alignment