Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   DNI88_RS13570 Genome accession   NZ_CP031561
Coordinates   1878352..1878867 (-) Length   171 a.a.
NCBI ID   WP_202995125.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain AP20     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1873352..1883867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DNI88_RS09125 (DNI88_09135) recQ 1873500..1875281 (-) 1782 WP_015728744.1 DNA helicase RecQ -
  DNI88_RS09130 (DNI88_09140) - 1875291..1877168 (-) 1878 WP_105503121.1 ABC-F family ATP-binding cassette domain-containing protein -
  DNI88_RS09135 (DNI88_09145) - 1877280..1878095 (+) 816 WP_015728742.1 ZIP family metal transporter -
  DNI88_RS13570 comA 1878352..1878867 (-) 516 WP_202995125.1 ATP-binding cassette domain-containing protein Regulator
  DNI88_RS09140 (DNI88_09150) comA 1878899..1880395 (-) 1497 WP_202995127.1 peptide cleavage/export ABC transporter Regulator
  DNI88_RS13575 - 1880319..1880510 (-) 192 WP_197737724.1 cysteine peptidase family C39 domain-containing protein -
  DNI88_RS09145 (DNI88_09160) - 1880885..1881193 (-) 309 WP_063284913.1 DUF3884 family protein -
  DNI88_RS09150 (DNI88_09165) - 1881268..1882398 (-) 1131 WP_159306489.1 glycosyltransferase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19052.27 Da        Isoelectric Point: 8.4055

>NTDB_id=307676 DNI88_RS13570 WP_202995125.1 1878352..1878867(-) (comA) [Staphylococcus pseudintermedius strain AP20]
MDITNINKSVLRQQIIYIPQQTYIFNGTILENLLLGVVKEVTQKDIDSAIKMAELKSFIDSLPLGLDSVLSSDFSALSGG
QRQKIALARALLTNSSILIMDEATSNIDILTERKIINNLMALNKTIIFISHNLNITQKVDKIFVLAKGKIIEEGSHEFLL
KAKGYYSNLIN

Nucleotide


Download         Length: 516 bp        

>NTDB_id=307676 DNI88_RS13570 WP_202995125.1 1878352..1878867(-) (comA) [Staphylococcus pseudintermedius strain AP20]
TTGGACATAACAAATATCAATAAATCTGTTTTACGACAGCAGATTATATACATTCCACAACAAACTTATATTTTTAATGG
AACTATACTTGAAAATCTTTTATTAGGGGTAGTTAAAGAGGTTACGCAAAAGGACATAGATAGTGCTATTAAAATGGCTG
AACTAAAATCCTTTATTGATAGCTTACCACTTGGACTTGATAGTGTATTAAGTTCTGATTTTTCTGCTTTGTCAGGAGGT
CAGCGGCAGAAGATAGCTTTAGCAAGAGCACTATTAACAAATTCTTCTATATTGATAATGGATGAAGCAACGAGTAATAT
TGATATACTCACGGAGAGAAAAATTATTAATAATTTGATGGCGTTAAATAAAACTATTATATTTATCTCCCATAATCTAA
ATATAACTCAAAAAGTAGATAAAATATTTGTTTTAGCAAAAGGAAAAATTATAGAAGAGGGCTCACATGAATTTTTATTA
AAAGCAAAAGGTTACTATTCTAACTTAATTAATTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(2-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis SK321

54.971

100

0.55
  comA Streptococcus mitis NCTC 12261

53.801

100

0.538
  comA Streptococcus pneumoniae Rx1

53.801

100

0.538
  comA Streptococcus pneumoniae D39

53.801

100

0.538
  comA Streptococcus pneumoniae R6

53.801

100

0.538
  comA Streptococcus gordonii str. Challis substr. CH1

53.216

100

0.532
  comA Streptococcus pneumoniae TIGR4

53.216

100

0.532
  comA/nlmT Streptococcus mutans UA159

50.292

100

0.503
  rcrQ Streptococcus mutans UA159

36.207

100

0.368

Multiple sequence alignment