Detailed information
Overview
| Name | pilF | Type | Machinery gene |
| Locus tag | DXT74_RS06750 | Genome accession | NZ_CP031514 |
| Coordinates | 1431348..1433054 (+) | Length | 568 a.a. |
| NCBI ID | WP_114153189.1 | Uniprot ID | - |
| Organism | Chromobacterium sp. Rain0013 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1426348..1438054
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DXT74_RS06730 (DXT74_06685) | - | 1426938..1427759 (+) | 822 | WP_114153191.1 | inner membrane protein YpjD | - |
| DXT74_RS06735 (DXT74_06690) | - | 1427794..1428174 (+) | 381 | WP_043637938.1 | helix-hairpin-helix domain-containing protein | - |
| DXT74_RS06740 (DXT74_06695) | - | 1428228..1429736 (-) | 1509 | WP_231138292.1 | deoxyribodipyrimidine photo-lyase | - |
| DXT74_RS06745 (DXT74_06700) | - | 1429978..1431126 (+) | 1149 | WP_194427604.1 | porin | - |
| DXT74_RS06750 (DXT74_06705) | pilF | 1431348..1433054 (+) | 1707 | WP_114153189.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| DXT74_RS06755 (DXT74_06710) | pilC | 1433267..1434490 (+) | 1224 | WP_194427605.1 | type II secretion system F family protein | Machinery gene |
| DXT74_RS06760 (DXT74_06715) | pilD | 1434487..1435356 (+) | 870 | WP_194427606.1 | A24 family peptidase | Machinery gene |
| DXT74_RS06765 (DXT74_06720) | coaE | 1435346..1435957 (+) | 612 | WP_081555553.1 | dephospho-CoA kinase | - |
| DXT74_RS06770 (DXT74_06725) | zapD | 1435996..1436754 (+) | 759 | WP_019100891.1 | cell division protein ZapD | - |
| DXT74_RS06775 (DXT74_06730) | yacG | 1436792..1436980 (+) | 189 | WP_043591348.1 | DNA gyrase inhibitor YacG | - |
Sequence
Protein
Download Length: 568 a.a. Molecular weight: 62208.79 Da Isoelectric Point: 5.4415
>NTDB_id=307247 DXT74_RS06750 WP_114153189.1 1431348..1433054(+) (pilF) [Chromobacterium sp. Rain0013]
MEASAGISGLGRALVQNNMLLQQDADAILRQSQASHISFVEQLIQSKKMTAQDVAMFASKTFGYPLLDMSAIDLDQLPKG
VVDDELVASRRLLPLLKRGNKLYVGTSDPTQTSAYHAITFKTGMTVEIVVVEDDKLGKMLGKYSEDATAAIKALENEDFG
DLEFADPDAPTDAGPQPDVDDAPVVKFIHKVLLDAINGGASDIHFEPYEKFYRIRYRVDGVLKEISQPPLVLKEKIASRI
KVISKLDISEKRVPQDGRMKLVISKARAIDFRVSTLPTLYGEKIVMRILDSSAANLDIEQLGFEPEQKRLLLDAIARPYG
MVLVTGPTGSGKTVSLYTCLNLLNKPDINIATAEDPVEINLPGINQVNVNERAGLTFASALKAFLRQDPDVIMVGEIRDF
ETADIAIKAAQTGHMVFSTLHTNNAPATLTRMLNMGVAPFNIASSVLLIMAQRLARRLCAHCKKPAEIPEEALLRAGFKQ
EELDGSWKPYAPVGCEECRNTGYRGRTGIYEVMPITDAMTRLIMQNGTAIDIADLARKEGMVDLRHAGLLKVKAGLTSLT
EIEAVTNE
MEASAGISGLGRALVQNNMLLQQDADAILRQSQASHISFVEQLIQSKKMTAQDVAMFASKTFGYPLLDMSAIDLDQLPKG
VVDDELVASRRLLPLLKRGNKLYVGTSDPTQTSAYHAITFKTGMTVEIVVVEDDKLGKMLGKYSEDATAAIKALENEDFG
DLEFADPDAPTDAGPQPDVDDAPVVKFIHKVLLDAINGGASDIHFEPYEKFYRIRYRVDGVLKEISQPPLVLKEKIASRI
KVISKLDISEKRVPQDGRMKLVISKARAIDFRVSTLPTLYGEKIVMRILDSSAANLDIEQLGFEPEQKRLLLDAIARPYG
MVLVTGPTGSGKTVSLYTCLNLLNKPDINIATAEDPVEINLPGINQVNVNERAGLTFASALKAFLRQDPDVIMVGEIRDF
ETADIAIKAAQTGHMVFSTLHTNNAPATLTRMLNMGVAPFNIASSVLLIMAQRLARRLCAHCKKPAEIPEEALLRAGFKQ
EELDGSWKPYAPVGCEECRNTGYRGRTGIYEVMPITDAMTRLIMQNGTAIDIADLARKEGMVDLRHAGLLKVKAGLTSLT
EIEAVTNE
Nucleotide
Download Length: 1707 bp
>NTDB_id=307247 DXT74_RS06750 WP_114153189.1 1431348..1433054(+) (pilF) [Chromobacterium sp. Rain0013]
ATGGAAGCTTCGGCTGGCATTTCCGGCTTGGGTCGGGCCTTGGTGCAAAACAATATGCTGTTGCAGCAGGATGCGGACGC
AATCCTGCGCCAGTCTCAGGCATCGCACATCAGCTTTGTCGAGCAGCTGATTCAGAGCAAGAAGATGACGGCGCAGGATG
TGGCGATGTTCGCGTCCAAGACCTTTGGTTACCCCTTGCTGGACATGTCGGCCATTGATCTTGATCAGTTGCCCAAGGGC
GTGGTTGATGACGAGTTGGTCGCCAGCCGGCGCTTACTGCCCCTGCTCAAGCGTGGCAACAAGCTGTATGTAGGCACTTC
CGATCCCACCCAGACCTCCGCCTATCACGCCATCACCTTCAAGACTGGGATGACGGTGGAAATCGTGGTGGTGGAGGATG
ATAAGCTGGGCAAGATGCTCGGCAAGTACAGCGAGGATGCCACCGCCGCGATCAAGGCCTTGGAGAACGAGGATTTTGGC
GATCTTGAATTCGCCGATCCGGATGCGCCGACCGATGCCGGCCCACAGCCGGATGTCGATGATGCGCCTGTGGTCAAGTT
CATCCATAAGGTGTTGTTGGATGCGATCAATGGCGGCGCGTCGGATATTCATTTCGAGCCCTATGAGAAGTTTTATCGCA
TCCGCTACCGGGTAGACGGGGTGTTGAAGGAGATTTCGCAGCCGCCCCTGGTATTGAAGGAAAAAATCGCCTCCCGGATC
AAGGTGATTTCCAAACTGGATATTTCGGAGAAGCGAGTGCCGCAGGATGGCCGGATGAAGCTGGTCATCTCCAAGGCGCG
GGCAATCGACTTCCGGGTCAGCACCTTGCCCACCTTGTACGGCGAGAAGATCGTCATGCGTATTCTGGACTCGTCGGCGG
CGAATCTGGATATCGAGCAGTTGGGCTTTGAACCGGAGCAGAAACGCCTACTGCTGGACGCGATTGCGCGGCCCTACGGC
ATGGTGCTGGTCACCGGACCTACCGGTAGCGGTAAAACGGTGTCCTTGTACACCTGCCTCAATCTGTTGAACAAGCCGGA
TATCAATATCGCCACCGCCGAAGACCCTGTGGAAATCAACTTGCCGGGCATCAATCAGGTCAACGTCAACGAGCGTGCCG
GGCTGACCTTCGCTTCGGCCTTGAAGGCCTTCCTGCGTCAGGATCCCGACGTGATCATGGTGGGTGAGATCCGGGATTTC
GAAACGGCGGACATCGCGATCAAGGCGGCTCAGACCGGCCATATGGTGTTTTCCACTCTACACACCAATAACGCGCCGGC
GACTTTGACCCGGATGCTGAATATGGGGGTGGCGCCGTTCAACATCGCCAGCTCGGTGTTGCTGATCATGGCGCAACGTT
TGGCGCGCCGTTTGTGCGCGCATTGCAAGAAACCGGCGGAGATTCCGGAGGAGGCATTGCTGCGGGCGGGATTCAAGCAA
GAGGAGTTGGATGGAAGCTGGAAGCCCTATGCGCCGGTGGGTTGCGAGGAGTGTCGCAACACCGGCTACCGTGGCCGTAC
CGGTATTTACGAAGTGATGCCGATTACCGATGCGATGACGCGTTTGATCATGCAAAACGGTACCGCCATCGATATCGCCG
ACCTGGCGCGCAAGGAGGGCATGGTGGACTTGCGCCATGCCGGTTTGCTGAAGGTGAAGGCGGGGTTGACGTCGTTGACG
GAGATTGAAGCGGTGACTAACGAGTAA
ATGGAAGCTTCGGCTGGCATTTCCGGCTTGGGTCGGGCCTTGGTGCAAAACAATATGCTGTTGCAGCAGGATGCGGACGC
AATCCTGCGCCAGTCTCAGGCATCGCACATCAGCTTTGTCGAGCAGCTGATTCAGAGCAAGAAGATGACGGCGCAGGATG
TGGCGATGTTCGCGTCCAAGACCTTTGGTTACCCCTTGCTGGACATGTCGGCCATTGATCTTGATCAGTTGCCCAAGGGC
GTGGTTGATGACGAGTTGGTCGCCAGCCGGCGCTTACTGCCCCTGCTCAAGCGTGGCAACAAGCTGTATGTAGGCACTTC
CGATCCCACCCAGACCTCCGCCTATCACGCCATCACCTTCAAGACTGGGATGACGGTGGAAATCGTGGTGGTGGAGGATG
ATAAGCTGGGCAAGATGCTCGGCAAGTACAGCGAGGATGCCACCGCCGCGATCAAGGCCTTGGAGAACGAGGATTTTGGC
GATCTTGAATTCGCCGATCCGGATGCGCCGACCGATGCCGGCCCACAGCCGGATGTCGATGATGCGCCTGTGGTCAAGTT
CATCCATAAGGTGTTGTTGGATGCGATCAATGGCGGCGCGTCGGATATTCATTTCGAGCCCTATGAGAAGTTTTATCGCA
TCCGCTACCGGGTAGACGGGGTGTTGAAGGAGATTTCGCAGCCGCCCCTGGTATTGAAGGAAAAAATCGCCTCCCGGATC
AAGGTGATTTCCAAACTGGATATTTCGGAGAAGCGAGTGCCGCAGGATGGCCGGATGAAGCTGGTCATCTCCAAGGCGCG
GGCAATCGACTTCCGGGTCAGCACCTTGCCCACCTTGTACGGCGAGAAGATCGTCATGCGTATTCTGGACTCGTCGGCGG
CGAATCTGGATATCGAGCAGTTGGGCTTTGAACCGGAGCAGAAACGCCTACTGCTGGACGCGATTGCGCGGCCCTACGGC
ATGGTGCTGGTCACCGGACCTACCGGTAGCGGTAAAACGGTGTCCTTGTACACCTGCCTCAATCTGTTGAACAAGCCGGA
TATCAATATCGCCACCGCCGAAGACCCTGTGGAAATCAACTTGCCGGGCATCAATCAGGTCAACGTCAACGAGCGTGCCG
GGCTGACCTTCGCTTCGGCCTTGAAGGCCTTCCTGCGTCAGGATCCCGACGTGATCATGGTGGGTGAGATCCGGGATTTC
GAAACGGCGGACATCGCGATCAAGGCGGCTCAGACCGGCCATATGGTGTTTTCCACTCTACACACCAATAACGCGCCGGC
GACTTTGACCCGGATGCTGAATATGGGGGTGGCGCCGTTCAACATCGCCAGCTCGGTGTTGCTGATCATGGCGCAACGTT
TGGCGCGCCGTTTGTGCGCGCATTGCAAGAAACCGGCGGAGATTCCGGAGGAGGCATTGCTGCGGGCGGGATTCAAGCAA
GAGGAGTTGGATGGAAGCTGGAAGCCCTATGCGCCGGTGGGTTGCGAGGAGTGTCGCAACACCGGCTACCGTGGCCGTAC
CGGTATTTACGAAGTGATGCCGATTACCGATGCGATGACGCGTTTGATCATGCAAAACGGTACCGCCATCGATATCGCCG
ACCTGGCGCGCAAGGAGGGCATGGTGGACTTGCGCCATGCCGGTTTGCTGAAGGTGAAGGCGGGGTTGACGTCGTTGACG
GAGATTGAAGCGGTGACTAACGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilF | Neisseria gonorrhoeae MS11 |
56.46 |
99.472 |
0.562 |
| pilB | Acinetobacter baumannii D1279779 |
53.713 |
100 |
0.548 |
| pilB | Acinetobacter baylyi ADP1 |
53.641 |
99.12 |
0.532 |
| pilB | Legionella pneumophila strain ERS1305867 |
51.579 |
100 |
0.518 |
| pilB | Vibrio cholerae strain A1552 |
49.281 |
97.887 |
0.482 |
| pilB | Vibrio parahaemolyticus RIMD 2210633 |
46.975 |
98.944 |
0.465 |
| pilB | Vibrio campbellii strain DS40M4 |
45.826 |
99.12 |
0.454 |
| pilF | Thermus thermophilus HB27 |
37.943 |
99.296 |
0.377 |
| pilB | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
37.544 |
98.944 |
0.371 |