Detailed information NTG0307249

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: DXT74_RS06760
• Genome accession: NZ_CP031514
• Coordinates: 1434487..1435356 (+)
• Length: 289 a.a.
• NCBI ID: WP_194427606.1
• Uniprot ID: -
• Organism: Chromobacterium sp. Rain0013
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1429487..1440356

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DXT74_RS06745 (DXT74_06700)	-	1429978..1431126 (+)	1149	WP_194427604.1	porin	-
DXT74_RS06750 (DXT74_06705)	pilF	1431348..1433054 (+)	1707	WP_114153189.1	type IV-A pilus assembly ATPase PilB	Machinery gene
DXT74_RS06755 (DXT74_06710)	pilC	1433267..1434490 (+)	1224	WP_194427605.1	type II secretion system F family protein	Machinery gene
DXT74_RS06760 (DXT74_06715)	pilD	1434487..1435356 (+)	870	WP_194427606.1	A24 family peptidase	Machinery gene
DXT74_RS06765 (DXT74_06720)	coaE	1435346..1435957 (+)	612	WP_081555553.1	dephospho-CoA kinase	-
DXT74_RS06770 (DXT74_06725)	zapD	1435996..1436754 (+)	759	WP_019100891.1	cell division protein ZapD	-
DXT74_RS06775 (DXT74_06730)	yacG	1436792..1436980 (+)	189	WP_043591348.1	DNA gyrase inhibitor YacG	-
DXT74_RS06780 (DXT74_06735)	-	1437045..1438286 (-)	1242	WP_019100893.1	N-acetylmuramoyl-L-alanine amidase	-
DXT74_RS06785 (DXT74_06740)	tsaE	1438247..1438732 (-)	486	WP_370551756.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	-
DXT74_RS06790 (DXT74_06745)	queG	1438737..1439813 (+)	1077	WP_019100895.1	tRNA epoxyqueuosine(34) reductase QueG	-
DXT74_RS06795 (DXT74_06750)	-	1439817..1440233 (-)	417	WP_019100896.1	MaoC family dehydratase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31848.73 Da
• Isoelectric Point: 6.9224

>NTDB_id=307249 DXT74_RS06760 WP_194427606.1 1434487..1435356(+) (pilD) [Chromobacterium sp. Rain0013]
MIEEWRWIAGSYPLAFAGAALALGLLVGSFLNVIIHRLPKMLEAEWRRNCVDCLQLEEDETSEPYNLMRPASHCPQCRAA
VRPWQNIPVLSFVLLSGRCGSCRAKIPWRYPVVELSTGLLFAFLAWRFGWSEQLPAYMGLTAVLLALTFIDADTQLLPDN
LTLPLLWGGLLFNLLTGTVPLADAVIGAMAGYLCLWLLFHGFKLATGKEGMGYGDFKLLAALGAWLGWTLLPLVILLSSL
VGAVVGVILILLSKHGRGQPLPFGPYLAAAGWIALIWGQDIVNWYLHAY

Nucleotide

• Length: 870 bp

>NTDB_id=307249 DXT74_RS06760 WP_194427606.1 1434487..1435356(+) (pilD) [Chromobacterium sp. Rain0013]
ATGATTGAGGAGTGGCGCTGGATCGCCGGCTCGTACCCGCTGGCTTTCGCCGGCGCGGCGCTGGCGCTGGGTTTGTTGGT
TGGCAGTTTTTTGAATGTGATCATTCATCGCTTGCCCAAGATGCTGGAGGCCGAGTGGCGGCGCAATTGCGTTGATTGTC
TGCAGTTGGAAGAGGACGAGACGTCCGAGCCCTACAACTTAATGCGGCCTGCCTCGCACTGCCCGCAATGCCGGGCCGCG
GTGCGTCCGTGGCAGAATATCCCGGTGTTGAGCTTTGTATTGCTGAGCGGACGCTGCGGCAGTTGCCGAGCCAAGATCCC
TTGGCGCTATCCGGTCGTGGAGCTGTCGACCGGGCTGTTGTTCGCTTTCCTGGCCTGGCGTTTCGGCTGGTCGGAACAGC
TGCCGGCCTATATGGGTTTGACCGCGGTGCTGCTGGCCCTGACTTTTATCGACGCGGATACGCAGCTGCTGCCGGACAAC
CTGACTTTGCCCTTGCTGTGGGGGGGCTTGTTATTCAATTTGCTGACCGGCACCGTGCCGCTGGCCGACGCGGTGATAGG
CGCGATGGCGGGCTATCTGTGCCTGTGGTTGCTGTTTCACGGTTTCAAGCTGGCCACCGGCAAGGAGGGCATGGGCTATG
GCGACTTCAAGCTGCTGGCCGCTTTGGGCGCGTGGTTGGGGTGGACTTTGCTGCCCTTGGTGATTTTGCTGTCTTCGCTG
GTGGGGGCAGTGGTGGGCGTGATCTTGATTTTGCTGTCCAAGCACGGACGCGGTCAGCCGCTGCCGTTTGGCCCTTATCT
TGCGGCCGCCGGCTGGATTGCTTTGATCTGGGGGCAGGACATTGTGAATTGGTATTTGCATGCCTATTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (23-128)

• Type IV leader peptidase family (Peptidase_A24) (140-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	53.763	96.54	0.519
pilD	Vibrio cholerae strain A1552	51.773	97.578	0.505
pilD	Neisseria gonorrhoeae MS11	52.399	93.772	0.491
pilD	Acinetobacter baumannii D1279779	49.442	93.08	0.46
pilD	Acinetobacter nosocomialis M2	48.699	93.08	0.453