Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DXX82_RS03700 Genome accession   NZ_CP031477
Coordinates   769787..771316 (+) Length   509 a.a.
NCBI ID   WP_115911558.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M27794     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 764787..776316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXX82_RS03675 oppC 765109..766044 (+) 936 WP_115911553.1 oligopeptide ABC transporter permease OppC -
  DXX82_RS03680 - 766054..767025 (+) 972 WP_115911554.1 ABC transporter ATP-binding protein -
  DXX82_RS03685 oppF 767022..768020 (+) 999 WP_005697416.1 murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF -
  DXX82_RS03690 - 768060..768929 (-) 870 WP_115911555.1 DUF535 family protein -
  DXX82_RS03695 yihA 769043..769657 (+) 615 WP_115911556.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  DXX82_RS03700 comM 769787..771316 (+) 1530 WP_115911558.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DXX82_RS03705 nfuA 771360..771944 (-) 585 WP_005694707.1 Fe-S biogenesis protein NfuA -
  DXX82_RS03710 - 772060..772749 (-) 690 WP_005697373.1 ComF family protein -
  DXX82_RS03715 comE 772769..774151 (-) 1383 WP_115911560.1 type IV pilus secretin PilQ Machinery gene
  DXX82_RS03720 - 774153..774536 (-) 384 WP_115911562.1 pilus assembly protein PilP -
  DXX82_RS03725 - 774536..775078 (-) 543 WP_115911564.1 competence protein ComC -
  DXX82_RS03730 - 775075..775587 (-) 513 WP_115911566.1 competence protein ComB -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55673.01 Da        Isoelectric Point: 9.7439

>NTDB_id=307123 DXX82_RS03700 WP_115911558.1 769787..771316(+) (comM) [Haemophilus parainfluenzae strain M27794]
MSLAIVYSRASIGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALMNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGILAASDQLDGSRLKQFEFVGELALTGELRGVHGVIPAILAAQKAKRAPIIAYQNANEASLVSEQETYFAKNL
LEVVQFLNNQEKLPLASLLAQESAVGFSAKNHLDLTDIIGQQHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTALLP
EMTDSEAIETASVTSLVQNELNFHNWKQRPFRAPHHSASLPALVGGGTIPKPGEISLAHNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLVAAMNPSPTGHYTGTHNRTSPQQVIRYLNRLSGPFLDRFDLSIEVPLLPQGSLQN
TGDRGETSQQVREKVLKVREIQLARAGKINAYLSSKEIERDCKLQDKDSLFLENALNKLGLSVRAYHRILKVSRTIADLN
GEKEIQQPHLAEALGYRAMDRLLQKLSAA

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=307123 DXX82_RS03700 WP_115911558.1 769787..771316(+) (comM) [Haemophilus parainfluenzae strain M27794]
ATGTCTCTTGCCATTGTTTATAGCCGTGCCTCAATAGGCGTACAAGCCCCTCTTGTTACCATTGAGGTACACTTAAGTAA
CGGAAAGCCTGGATTTACCTTAGTTGGCCTCCCCGAAAAAACTGTAAAAGAAGCACAAGATCGAGTCAGAAGTGCATTAA
TGAATGCGCAGTTCAAATATCCTGCCAAACGCATCACCGTCAACCTTGCACCGGCTGATTTACCCAAAGAAGGGGGACGA
TTTGATTTACCCATTGCGATAGGTATTTTGGCTGCATCAGATCAATTAGATGGTAGCCGTTTAAAACAATTTGAATTCGT
TGGTGAACTCGCATTAACAGGTGAATTACGTGGTGTACACGGCGTGATCCCCGCCATTTTAGCGGCACAAAAAGCCAAAC
GAGCCCCCATTATCGCTTATCAAAATGCCAATGAAGCCTCACTTGTCTCAGAACAAGAGACTTATTTCGCTAAAAATCTT
TTGGAAGTCGTGCAATTCTTAAATAATCAAGAAAAATTACCTTTGGCCTCATTACTCGCACAAGAAAGTGCGGTCGGATT
TTCAGCTAAAAATCACTTAGATTTGACGGATATTATTGGTCAGCAACATGCTAAACGAGCACTAACAATAGCTGCCGCAG
GTCAGCACAACCTACTCTTTTTAGGTCCTCCCGGTACAGGTAAAACCATGTTAGCAAGTCGTCTCACCGCATTACTCCCT
GAAATGACTGATTCAGAAGCCATTGAAACCGCTTCGGTTACGAGTTTAGTACAAAATGAATTAAATTTTCATAACTGGAA
ACAACGACCGTTTCGAGCACCACATCATAGTGCCTCTTTGCCAGCCTTAGTAGGTGGAGGAACCATTCCAAAACCAGGCG
AAATATCGCTCGCACATAATGGCGTACTTTTTCTTGATGAATTGCCTGAGTTTGAGCGTAAAGTACTTGATGCACTCCGC
CAGCCATTAGAAAGTGGAGAAATTATTATTTCGCGAGCCAATGCTAAAATCCAATTTCCTGCTCGCTTTCAATTAGTTGC
GGCGATGAATCCAAGTCCAACGGGGCATTATACGGGAACACATAACCGCACCTCGCCACAACAAGTGATACGTTATTTAA
ATCGCCTTTCTGGCCCATTTTTAGATCGCTTTGATTTATCCATTGAAGTACCCCTTCTGCCACAAGGTAGCTTACAGAAT
ACTGGAGATAGAGGCGAAACAAGCCAACAAGTAAGAGAAAAAGTGTTAAAAGTGAGAGAAATTCAACTTGCTCGAGCAGG
CAAGATCAATGCATATCTTTCAAGCAAAGAAATTGAACGAGACTGTAAATTACAAGATAAAGATTCACTATTTCTTGAGA
ATGCACTGAATAAGCTAGGGCTTTCAGTAAGAGCCTACCATCGAATTTTGAAAGTCTCACGCACAATTGCCGATTTGAAT
GGCGAAAAAGAGATACAACAACCTCATTTAGCAGAAGCGCTAGGATATCGGGCGATGGATCGATTGTTACAGAAATTATC
TGCCGCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

91.716

99.607

0.914
  comM Glaesserella parasuis strain SC1401

79.684

99.607

0.794
  comM Vibrio cholerae strain A1552

67.126

99.804

0.67
  comM Vibrio campbellii strain DS40M4

65.815

100

0.658
  comM Legionella pneumophila str. Paris

52.381

99.018

0.519
  comM Legionella pneumophila strain ERS1305867

52.381

99.018

0.519
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.379

100

0.479

Multiple sequence alignment