Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | DVV14_RS00510 | Genome accession | NZ_CP031472 |
| Coordinates | 119404..119703 (+) | Length | 99 a.a. |
| NCBI ID | WP_019277884.1 | Uniprot ID | A0A1V0I6C0 |
| Organism | Vibrio coralliilyticus strain RE22 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 114404..124703
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DVV14_RS00495 (DVV14_00515) | lon | 114415..116766 (+) | 2352 | WP_129542179.1 | endopeptidase La | - |
| DVV14_RS00500 (DVV14_00520) | - | 116959..117231 (+) | 273 | WP_004414742.1 | HU family DNA-binding protein | - |
| DVV14_RS00505 (DVV14_00525) | ppiD | 117405..119264 (+) | 1860 | WP_064488463.1 | peptidylprolyl isomerase | - |
| DVV14_RS00510 (DVV14_00530) | comEA | 119404..119703 (+) | 300 | WP_019277884.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| DVV14_RS00515 (DVV14_00535) | cmk | 119844..120524 (+) | 681 | WP_019277885.1 | (d)CMP kinase | - |
| DVV14_RS00520 (DVV14_00540) | rpsA | 120628..122298 (+) | 1671 | WP_006959338.1 | 30S ribosomal protein S1 | - |
| DVV14_RS00525 (DVV14_00545) | ihfB | 122509..122790 (+) | 282 | WP_006959336.1 | integration host factor subunit beta | - |
| DVV14_RS00530 (DVV14_00550) | - | 122929..123210 (+) | 282 | WP_021457153.1 | lipopolysaccharide assembly protein LapA domain-containing protein | - |
| DVV14_RS00535 (DVV14_00555) | lapB | 123236..124405 (+) | 1170 | WP_064488462.1 | lipopolysaccharide assembly protein LapB | - |
Sequence
Protein
Download Length: 99 a.a. Molecular weight: 10588.39 Da Isoelectric Point: 6.2913
>NTDB_id=307040 DVV14_RS00510 WP_019277884.1 119404..119703(+) (comEA) [Vibrio coralliilyticus strain RE22]
MLRILWTSLLMVLAVYSPTTVSAEKTTNSEYAGIEITVNVNTAEAAELAALLTGVGAKKAEAIVQYRDENGPFLKVTDLA
LVKGIGPALIDKNLSRIKL
MLRILWTSLLMVLAVYSPTTVSAEKTTNSEYAGIEITVNVNTAEAAELAALLTGVGAKKAEAIVQYRDENGPFLKVTDLA
LVKGIGPALIDKNLSRIKL
Nucleotide
Download Length: 300 bp
>NTDB_id=307040 DVV14_RS00510 WP_019277884.1 119404..119703(+) (comEA) [Vibrio coralliilyticus strain RE22]
ATGCTACGCATACTTTGGACGAGTCTTTTAATGGTGCTCGCGGTATATAGCCCAACTACTGTATCGGCTGAAAAAACCAC
CAACTCAGAATACGCTGGAATAGAGATTACAGTGAATGTTAATACGGCTGAAGCGGCTGAATTAGCGGCGCTACTAACTG
GTGTTGGTGCGAAAAAAGCTGAGGCTATTGTTCAATATAGGGACGAAAACGGTCCCTTTTTGAAGGTGACTGATTTGGCT
TTGGTTAAAGGTATTGGCCCCGCTTTAATAGACAAAAACCTCAGTCGTATAAAGTTGTAA
ATGCTACGCATACTTTGGACGAGTCTTTTAATGGTGCTCGCGGTATATAGCCCAACTACTGTATCGGCTGAAAAAACCAC
CAACTCAGAATACGCTGGAATAGAGATTACAGTGAATGTTAATACGGCTGAAGCGGCTGAATTAGCGGCGCTACTAACTG
GTGTTGGTGCGAAAAAAGCTGAGGCTATTGTTCAATATAGGGACGAAAACGGTCCCTTTTTGAAGGTGACTGATTTGGCT
TTGGTTAAAGGTATTGGCCCCGCTTTAATAGACAAAAACCTCAGTCGTATAAAGTTGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
52.747 |
91.919 |
0.485 |
| comEA | Vibrio campbellii strain DS40M4 |
51.648 |
91.919 |
0.475 |
| comEA | Vibrio cholerae C6706 |
53.571 |
84.848 |
0.455 |
| comEA | Vibrio cholerae strain A1552 |
53.571 |
84.848 |
0.455 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
39.091 |
100 |
0.434 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
38.679 |
100 |
0.414 |