Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   DV160_RS12500 Genome accession   NZ_CP031336
Coordinates   2100807..2101406 (+) Length   199 a.a.
NCBI ID   WP_002221479.1    Uniprot ID   A1KS89
Organism   Neisseria meningitidis strain M21717     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2095807..2106406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV160_RS12485 yihA 2096391..2097020 (+) 630 WP_002217904.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  DV160_RS12490 - 2097141..2099537 (-) 2397 WP_002219786.1 penicillin-binding protein 1A -
  DV160_RS12495 pilM 2099689..2100804 (+) 1116 WP_002214517.1 type IV pilus biogenesis protein PilM -
  DV160_RS12500 pilN 2100807..2101406 (+) 600 WP_002221479.1 PilN domain-containing protein Machinery gene
  DV160_RS12505 - 2101407..2102054 (+) 648 WP_002217908.1 type 4a pilus biogenesis protein PilO -
  DV160_RS12510 pilP 2102072..2102617 (+) 546 WP_002214522.1 pilus assembly protein PilP Machinery gene
  DV160_RS12515 pilQ 2102636..2104945 (+) 2310 WP_002221480.1 type IV pilus secretin PilQ Machinery gene

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22243.45 Da        Isoelectric Point: 9.5493

>NTDB_id=306093 DV160_RS12500 WP_002221479.1 2100807..2101406(+) (pilN) [Neisseria meningitidis strain M21717]
MNNLIKINLLPYREEMNKRKQQQFKTLMYGAVLTGVAAVAATYLFIDNMINNQSERNTLLETSIAHLDTELSEIQKLKQE
KDAFLIKKNKVEELQLKRLQAAKILDSLNEAVPGSTYLTSLDAVTADSYRLSGRTSSDNRVAAMMRAMPNTGIFKQPELL
SIKKNNSHQEFTLQATLQPIVKAAESKENPASGNAQEAN

Nucleotide


Download         Length: 600 bp        

>NTDB_id=306093 DV160_RS12500 WP_002221479.1 2100807..2101406(+) (pilN) [Neisseria meningitidis strain M21717]
ATGAACAATTTAATCAAAATCAACCTCCTCCCCTACAGGGAAGAGATGAACAAGCGCAAACAGCAGCAGTTTAAAACGCT
GATGTACGGTGCCGTGCTGACGGGCGTTGCCGCCGTTGCGGCAACCTACCTGTTTATCGACAATATGATCAATAACCAGT
CGGAAAGAAACACGCTGCTGGAAACCTCCATCGCACACTTGGATACCGAGCTGTCGGAAATACAAAAGCTCAAACAGGAA
AAAGATGCCTTCCTGATTAAGAAAAACAAAGTCGAGGAGCTCCAGCTCAAACGCCTCCAAGCCGCAAAAATCCTCGACAG
CCTGAATGAGGCCGTCCCCGGAAGCACCTACCTGACCTCGCTGGATGCCGTTACCGCCGACTCTTATCGGCTCAGCGGCA
GGACATCCAGCGACAACCGCGTTGCCGCCATGATGAGGGCGATGCCCAATACCGGCATATTCAAGCAACCCGAATTGTTA
AGCATCAAGAAAAACAATTCGCATCAAGAATTTACCCTTCAGGCAACATTACAACCCATCGTAAAGGCGGCCGAATCCAA
AGAGAATCCGGCTTCGGGAAACGCACAGGAGGCAAACTGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(104-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A1KS89

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

99.497

100

0.995

Multiple sequence alignment