Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   DV163_RS08910 Genome accession   NZ_CP031330
Coordinates   1506201..1506713 (+) Length   170 a.a.
NCBI ID   WP_115437313.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M21955     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1501201..1511713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV163_RS14185 - 1501264..1501473 (+) 210 Protein_1456 pilin -
  DV163_RS08850 - 1501655..1501966 (+) 312 Protein_1457 pilin -
  DV163_RS13980 - 1502322..1502621 (+) 300 Protein_1458 pilin -
  DV163_RS08870 - 1502902..1503321 (+) 420 Protein_1459 pilin -
  DV163_RS08880 - 1503639..1503959 (+) 321 Protein_1460 pilin -
  DV163_RS08890 - 1504487..1504873 (+) 387 Protein_1461 pilin -
  DV163_RS08900 - 1505138..1505560 (+) 423 Protein_1462 pilin -
  DV163_RS08910 pilE 1506201..1506713 (+) 513 WP_115437313.1 fimbrial major subunit PilE Machinery gene
  DV163_RS13435 - 1507363..1507806 (-) 444 WP_148088094.1 hypothetical protein -
  DV163_RS08925 lpxC 1507798..1508721 (+) 924 WP_002216134.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  DV163_RS08945 gnd 1510097..1511545 (+) 1449 WP_002225759.1 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18001.47 Da        Isoelectric Point: 8.4525

>NTDB_id=305845 DV163_RS08910 WP_115437313.1 1506201..1506713(+) (pilE) [Neisseria meningitidis strain M21955]
MNTLQKGFTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNHGEWPGDNSSAGVATSSEIK
GKYVKSVEVKNGVVTATMLSSGVNKEIQGKKLSLWAKRQAGSVKWFCGQPVERDNAKAANDDVTAAAAANGKKIDTKHLP
STCRDASDAS

Nucleotide


Download         Length: 513 bp        

>NTDB_id=305845 DV163_RS08910 WP_115437313.1 1506201..1506713(+) (pilE) [Neisseria meningitidis strain M21955]
ATGAACACCCTTCAAAAAGGTTTTACCCTTATCGAGCTGATGATTGTGATTGCCATCGTCGGCATTTTGGCGGCAGTCGC
CCTTCCTGCTTATCAAGACTACACAGCCCGCGCACAAGTTTCCGAAGCCATTCTTTTGGCCGAAGGTCAAAAATCAGCCG
TTACCGAGTATTACCTGAATCACGGCGAATGGCCCGGCGACAACAGTTCTGCCGGCGTGGCAACCTCCTCTGAAATCAAA
GGCAAATATGTTAAAAGCGTTGAAGTCAAAAACGGCGTCGTTACCGCCACAATGCTTTCAAGCGGCGTAAACAAAGAAAT
CCAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGCCGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTGAGCGCG
ACAACGCCAAAGCCGCCAACGACGACGTTACCGCCGCCGCCGCCGCCAACGGTAAGAAGATTGACACCAAGCACCTGCCG
TCAACCTGCCGCGATGCAAGTGATGCCAGCTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)

Pilin (bacterial filament) (Pilin)

(36-164)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

81.871

100

0.824
  pilE Neisseria gonorrhoeae strain FA1090

80

100

0.8
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

34.375

100

0.388
  pilA/pilA1 Eikenella corrodens VA1

36.517

100

0.382
  comP Acinetobacter baylyi ADP1

37.278

99.412

0.371

Multiple sequence alignment