Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DV115_RS03695 Genome accession   NZ_CP031325
Coordinates   713749..715245 (-) Length   498 a.a.
NCBI ID   WP_003750275.1    Uniprot ID   -
Organism   Neisseria polysaccharea strain M18661     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 708749..720245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV115_RS03660 mraZ 708847..709302 (-) 456 WP_002222027.1 division/cell wall cluster transcriptional repressor MraZ -
  DV115_RS03665 - 709651..710799 (+) 1149 WP_003750279.1 class I SAM-dependent methyltransferase -
  DV115_RS03680 - 711277..712098 (-) 822 WP_003750278.1 undecaprenyl-diphosphate phosphatase -
  DV115_RS03685 dsbA1 712133..712777 (-) 645 WP_003750277.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  DV115_RS03690 ftsN 712780..713643 (-) 864 WP_025456631.1 cell division protein FtsN -
  DV115_RS03695 comM 713749..715245 (-) 1497 WP_003750275.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DV115_RS03700 - 715260..715580 (-) 321 WP_003750274.1 accessory factor UbiK family protein -
  DV115_RS11565 - 715635..715778 (+) 144 WP_155811397.1 hypothetical protein -
  DV115_RS03705 putP 716061..717587 (+) 1527 WP_003750272.1 sodium/proline symporter PutP -
  DV115_RS11570 - 717677..717850 (-) 174 WP_162818721.1 hypothetical protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53544.52 Da        Isoelectric Point: 6.8995

>NTDB_id=305637 DV115_RS03695 WP_003750275.1 713749..715245(-) (comM) [Neisseria polysaccharea strain M18661]
MSLALVYSRALSGMNAPLVEVEAHLANGLPHFNIVGLPDTEVKESRDRVRAAIIQSGFEFPTKKITVNLAPADLPKESGR
FDLPIAIGILAASGQVAPEKLAEYEFAGELALSGLLRPVRGALAMAWQGMQAKRAFVLPEENAGQAAVMRGITVYGARSL
GEVAAHLNGIEPLAQTECSIPQMPSEHGGQPDLCDVKGQHTARLALEIAAAGGHSLLMMGPPGTGKSMLSQRLPGILPPL
TEDELVEVWALRSLLPNHQQQLDSNRPFRSPHHSASAAAMVGGGSDPRPGEISLAHHGVLFLDELPEFDRKVLEVLREPL
ENGEIHISRAARQAVYPAKFQLVAAMNPCPCGYLGHPVKPCRCTPESVARYRSKISGPLLDRIDLTIEVPSLSAAELMQQ
EAGESSASVLERVIAARDKQYARQGKVNAALSVSELDSQARIQKEAQEALGSLLEKLSLSARSFHRIMRVARTLADLSGD
EEVGRSHVMKAIGFRRAL

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=305637 DV115_RS03695 WP_003750275.1 713749..715245(-) (comM) [Neisseria polysaccharea strain M18661]
ATGTCGCTTGCCTTGGTTTACAGCCGCGCCTTGAGCGGTATGAATGCGCCGTTGGTCGAAGTGGAAGCCCACCTTGCCAA
CGGCCTGCCGCATTTCAACATCGTCGGACTGCCCGATACGGAAGTCAAAGAAAGTCGCGACCGCGTCCGTGCCGCCATTA
TTCAAAGCGGTTTTGAATTCCCCACCAAAAAAATTACCGTCAACCTCGCCCCCGCCGACCTGCCCAAAGAGTCGGGGCGT
TTCGATTTGCCGATTGCAATCGGCATCCTTGCTGCATCGGGGCAGGTTGCGCCCGAAAAACTGGCGGAATACGAGTTTGC
GGGGGAATTGGCACTGTCGGGGCTGTTGCGCCCCGTGCGCGGCGCGTTGGCGATGGCGTGGCAGGGTATGCAGGCAAAAC
GTGCATTTGTTTTGCCTGAAGAAAACGCAGGACAAGCCGCCGTGATGCGCGGCATTACCGTTTACGGCGCGCGCTCTTTG
GGCGAAGTCGCCGCTCATTTGAACGGCATCGAACCTTTGGCGCAAACCGAATGTTCCATACCGCAAATGCCGTCTGAACA
TGGCGGACAACCTGATTTGTGTGATGTGAAAGGTCAGCACACTGCCCGCCTTGCTTTGGAAATCGCTGCCGCAGGCGGAC
ACAGCCTTTTGATGATGGGTCCGCCGGGAACGGGCAAGTCTATGCTCTCCCAACGGCTGCCCGGCATCCTGCCGCCGCTG
ACCGAAGACGAATTGGTCGAAGTTTGGGCATTGCGTTCGCTCCTTCCCAACCACCAGCAACAACTCGACAGCAACCGTCC
TTTCCGCAGTCCGCACCACAGCGCCAGCGCGGCGGCTATGGTCGGAGGCGGTTCGGACCCGCGTCCGGGCGAGATTTCAT
TGGCGCATCACGGCGTTTTGTTTTTGGACGAATTGCCCGAGTTCGACCGCAAAGTTTTGGAAGTGTTGCGCGAACCTTTG
GAAAACGGCGAAATCCACATTTCCCGCGCGGCGCGCCAAGCCGTCTATCCTGCCAAATTCCAACTCGTCGCCGCCATGAA
CCCCTGCCCGTGCGGCTATCTCGGGCATCCCGTCAAACCCTGCCGCTGCACACCCGAAAGCGTCGCGCGTTACCGCAGCA
AAATTTCCGGCCCGTTGCTTGACCGCATCGATTTGACCATCGAAGTCCCGAGCCTGTCCGCCGCCGAACTGATGCAGCAG
GAAGCAGGGGAAAGCAGCGCGTCCGTTTTGGAACGCGTTATCGCCGCCAGAGACAAACAATACGCACGGCAAGGCAAAGT
GAATGCCGCTTTGAGCGTCAGCGAACTCGATTCCCAAGCCCGCATCCAAAAAGAAGCGCAGGAAGCATTGGGCAGCCTGC
TGGAAAAACTCTCCCTCTCCGCCCGCAGTTTCCACCGCATCATGCGTGTTGCACGGACGCTGGCAGACCTGTCGGGCGAC
GAAGAAGTCGGCAGAAGCCACGTCATGAAAGCCATAGGTTTCCGCCGTGCTTTATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-396)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.988

100

0.534
  comM Vibrio campbellii strain DS40M4

51.992

100

0.524
  comM Haemophilus influenzae Rd KW20

49.299

100

0.494
  comM Glaesserella parasuis strain SC1401

48.413

100

0.49
  comM Legionella pneumophila str. Paris

46.733

100

0.474
  comM Legionella pneumophila strain ERS1305867

46.733

100

0.474
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.942

100

0.434

Multiple sequence alignment