Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   DV115_RS03685 Genome accession   NZ_CP031325
Coordinates   712133..712777 (-) Length   214 a.a.
NCBI ID   WP_003750277.1    Uniprot ID   -
Organism   Neisseria polysaccharea strain M18661     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 707133..717777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV115_RS03650 ftsL 707604..707867 (-) 264 WP_002220363.1 cell division protein FtsL -
  DV115_RS03655 rsmH 707891..708850 (-) 960 WP_003750280.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  DV115_RS03660 mraZ 708847..709302 (-) 456 WP_002222027.1 division/cell wall cluster transcriptional repressor MraZ -
  DV115_RS03665 - 709651..710799 (+) 1149 WP_003750279.1 class I SAM-dependent methyltransferase -
  DV115_RS03680 - 711277..712098 (-) 822 WP_003750278.1 undecaprenyl-diphosphate phosphatase -
  DV115_RS03685 dsbA1 712133..712777 (-) 645 WP_003750277.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  DV115_RS03690 ftsN 712780..713643 (-) 864 WP_025456631.1 cell division protein FtsN -
  DV115_RS03695 comM 713749..715245 (-) 1497 WP_003750275.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DV115_RS03700 - 715260..715580 (-) 321 WP_003750274.1 accessory factor UbiK family protein -
  DV115_RS11565 - 715635..715778 (+) 144 WP_155811397.1 hypothetical protein -
  DV115_RS03705 putP 716061..717587 (+) 1527 WP_003750272.1 sodium/proline symporter PutP -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23924.83 Da        Isoelectric Point: 9.7103

>NTDB_id=305636 DV115_RS03685 WP_003750277.1 712133..712777(-) (dsbA1) [Neisseria polysaccharea strain M18661]
MKFKHLLPLLLSAVLSAQAYALTEGEDYLVLDKPIPQEQSGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTEH
VVWQPEMLGLARMAAAVNLSGLKYQANPAVFKAVYEQKIRLENRSVAGKWALSQKGFDGKKLMRAYDSPEAAAAALKMQK
LTEQYGIDSTPTVIVGGKYRVIFNNGFDGGVHTIKELVAKVREERKLSNRSTQK

Nucleotide


Download         Length: 645 bp        

>NTDB_id=305636 DV115_RS03685 WP_003750277.1 712133..712777(-) (dsbA1) [Neisseria polysaccharea strain M18661]
ATGAAGTTCAAACATCTGTTGCCGCTGCTGCTGTCGGCAGTGTTGTCCGCGCAGGCATATGCCCTGACGGAAGGGGAAGA
CTATCTTGTGTTGGATAAACCCATTCCTCAAGAACAGTCGGGCAAAATTGAGGTTTTGGAATTTTTCGGCTATTTCTGCG
TACATTGCCATCATTTCGATCCTTTGTTATTGAAATTGGGCAAGGCATTGCCGTCTGATGCCTATTTAAGGACGGAGCAC
GTGGTCTGGCAGCCTGAAATGCTCGGTCTGGCCAGGATGGCGGCCGCCGTCAATTTGTCGGGTTTGAAATATCAGGCAAA
CCCTGCCGTGTTTAAAGCAGTTTACGAACAAAAAATCCGCTTGGAAAACAGGTCGGTTGCCGGAAAATGGGCTTTGTCTC
AAAAAGGCTTTGACGGCAAAAAACTGATGCGCGCCTATGATTCTCCCGAGGCCGCCGCCGCAGCATTAAAAATGCAGAAA
CTGACGGAACAATACGGTATTGACAGCACGCCGACCGTTATTGTCGGCGGAAAATACCGCGTTATCTTCAATAATGGCTT
TGACGGCGGCGTTCATACGATTAAAGAATTGGTTGCCAAAGTCAGGGAAGAACGCAAACTGTCAAACCGTTCTACGCAAA
AATAA

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(42-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

57.219

87.383

0.5
  dsbA2 Neisseria meningitidis MC58

51.892

86.449

0.449

Multiple sequence alignment