Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   DWB94_RS08215 Genome accession   NZ_CP031277
Coordinates   1664210..1664794 (+) Length   194 a.a.
NCBI ID   WP_002448199.1    Uniprot ID   A0A974QMC2
Organism   Staphylococcus hominis strain 19A     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1659210..1669794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DWB94_RS08190 (DWB94_08190) - 1660088..1661455 (-) 1368 WP_017175788.1 isochorismate synthase -
  DWB94_RS08195 (DWB94_08195) - 1661636..1662574 (+) 939 WP_049379560.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  DWB94_RS08200 (DWB94_08200) - 1662622..1663173 (-) 552 WP_017175790.1 GNAT family N-acetyltransferase -
  DWB94_RS08205 (DWB94_08205) - 1663317..1663529 (+) 213 WP_017175791.1 TM2 domain-containing protein -
  DWB94_RS11640 - 1663618..1663716 (+) 99 WP_017175792.1 SAR1012 family small protein -
  DWB94_RS08210 (DWB94_08210) - 1663784..1664002 (-) 219 WP_002488353.1 IDEAL domain-containing protein -
  DWB94_RS08215 (DWB94_08215) comK/comK1 1664210..1664794 (+) 585 WP_002448199.1 competence protein ComK Regulator
  DWB94_RS08230 (DWB94_08230) - 1665196..1666185 (-) 990 WP_049416368.1 lipoate--protein ligase -
  DWB94_RS08235 (DWB94_08235) - 1666374..1666550 (+) 177 WP_002448045.1 DUF2187 family protein -
  DWB94_RS08240 (DWB94_08240) - 1666566..1667168 (+) 603 WP_019835286.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  DWB94_RS08245 (DWB94_08245) - 1667332..1668690 (-) 1359 WP_048679996.1 TrkH family potassium uptake protein -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 22940.27 Da        Isoelectric Point: 9.6668

>NTDB_id=305397 DWB94_RS08215 WP_002448199.1 1664210..1664794(+) (comK/comK1) [Staphylococcus hominis strain 19A]
MTQFNKPPNTIYVIRKGDMVIRPTFDNHQQPNGSEILKFDTSREISPFKTQKIIERSCRFYGNNYLSKKAETQRIAGITS
KPPILLTPLFPTYFFPTHSDRLEENIWINMHYISDIKPLKNRKSKIIFANQEALTLNVSFHSLWHQYSNSIFYYYMIDKQ
ARMKSNNPDMPIDYEKTSLNIFEALSHYSLLEDK

Nucleotide


Download         Length: 585 bp        

>NTDB_id=305397 DWB94_RS08215 WP_002448199.1 1664210..1664794(+) (comK/comK1) [Staphylococcus hominis strain 19A]
ATGACTCAGTTCAATAAACCTCCTAATACGATTTATGTCATACGTAAAGGTGATATGGTGATTAGACCTACATTTGACAA
TCATCAACAACCGAACGGCTCAGAAATCCTCAAATTCGATACCTCACGAGAAATAAGCCCTTTTAAAACTCAAAAAATTA
TTGAACGATCATGTAGATTTTATGGCAATAACTACTTAAGCAAGAAAGCTGAAACTCAACGCATCGCTGGAATAACTAGT
AAACCTCCCATCCTTCTCACACCATTGTTTCCAACTTACTTTTTCCCAACACATTCAGACCGTTTAGAAGAAAATATATG
GATTAATATGCATTATATTTCTGATATTAAGCCATTAAAAAACAGAAAGAGTAAAATTATCTTTGCAAATCAAGAAGCAC
TAACATTAAATGTATCTTTTCATAGTTTATGGCATCAATATTCTAATTCTATTTTCTATTACTATATGATTGATAAACAA
GCAAGAATGAAATCTAATAATCCAGATATGCCAATCGATTATGAAAAAACATCTTTAAATATTTTTGAGGCACTTTCACA
CTATTCTTTATTAGAAGATAAATAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(11-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

73.913

94.845

0.701
  comK/comK1 Staphylococcus aureus N315

73.913

94.845

0.701

Multiple sequence alignment