Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DWB96_RS11465 Genome accession   NZ_CP031271
Coordinates   2367077..2367547 (-) Length   156 a.a.
NCBI ID   WP_145375965.1    Uniprot ID   -
Organism   Staphylococcus caprae strain 26D     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2362077..2372547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DWB96_RS11420 (DWB96_11450) - 2362802..2363239 (-) 438 WP_240700737.1 terminase small subunit -
  DWB96_RS11425 (DWB96_11455) - 2363493..2363894 (-) 402 WP_145376066.1 hypothetical protein -
  DWB96_RS11430 (DWB96_11460) rinB 2363968..2364135 (-) 168 WP_145375951.1 transcriptional activator RinB -
  DWB96_RS11435 (DWB96_11465) - 2364172..2364696 (-) 525 WP_145375953.1 dUTP diphosphatase -
  DWB96_RS13315 - 2364689..2364859 (-) 171 WP_167495594.1 hypothetical protein -
  DWB96_RS11440 (DWB96_11470) - 2364852..2365220 (-) 369 WP_145375955.1 hypothetical protein -
  DWB96_RS11445 (DWB96_11475) - 2365217..2365582 (-) 366 WP_145375957.1 hypothetical protein -
  DWB96_RS11450 (DWB96_11480) - 2365569..2365778 (-) 210 WP_145375959.1 hypothetical protein -
  DWB96_RS11455 (DWB96_11485) - 2365791..2366159 (-) 369 WP_145375961.1 SA1788 family PVL leukocidin-associated protein -
  DWB96_RS11460 (DWB96_11490) - 2366163..2367044 (-) 882 WP_145375963.1 DnaD domain-containing protein -
  DWB96_RS11465 (DWB96_11495) ssbA 2367077..2367547 (-) 471 WP_145375965.1 single-stranded DNA-binding protein Machinery gene
  DWB96_RS11470 (DWB96_11500) - 2367548..2368165 (-) 618 WP_338123479.1 MBL fold metallo-hydrolase -
  DWB96_RS11475 (DWB96_11505) - 2368246..2369169 (-) 924 WP_145375969.1 recombinase RecT -
  DWB96_RS11480 (DWB96_11510) - 2369171..2371123 (-) 1953 WP_145375971.1 AAA family ATPase -
  DWB96_RS11485 (DWB96_11515) - 2371522..2372178 (+) 657 WP_145375973.1 hypothetical protein -
  DWB96_RS13555 - 2372364..2372489 (-) 126 WP_338123440.1 DUF771 domain-containing protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17460.09 Da        Isoelectric Point: 4.9328

>NTDB_id=305305 DWB96_RS11465 WP_145375965.1 2367077..2367547(-) (ssbA) [Staphylococcus caprae strain 26D]
MINRVVLVGRLTKDPEFRTTPSGVEVANFTLAINRNFTNAQGERESDFINVIVFRKQAQNVNNYLSKGKLAGVDGRMQSR
SYENQEGRRVFVTEVVADSVQFLEPKDNNNGQQDTYQQQANQQRGQSQSSNDKAQSSNPFANANGPIDISDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=305305 DWB96_RS11465 WP_145375965.1 2367077..2367547(-) (ssbA) [Staphylococcus caprae strain 26D]
ATGATTAACAGAGTTGTATTGGTGGGTCGTTTAACGAAAGATCCAGAATTCAGAACTACGCCAAGTGGTGTAGAAGTTGC
TAACTTCACATTAGCAATAAATAGAAATTTTACTAACGCACAAGGCGAACGTGAATCAGACTTTATTAACGTCATTGTAT
TTAGAAAGCAAGCGCAGAATGTAAATAACTATTTGAGTAAAGGTAAGTTAGCAGGCGTTGATGGACGTATGCAATCGCGA
AGTTACGAAAATCAAGAAGGTAGACGTGTATTCGTTACTGAGGTTGTTGCTGATAGCGTTCAGTTTCTAGAACCAAAGGA
TAATAATAACGGTCAACAAGATACTTATCAGCAGCAAGCAAATCAACAAAGAGGACAGTCGCAATCATCTAATGATAAAG
CACAAAGTAGTAATCCTTTTGCAAATGCCAATGGACCGATTGATATCTCTGATGATGATTTACCTTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.062

100

0.647
  ssb Latilactobacillus sakei subsp. sakei 23K

50

100

0.551
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

67.949

0.391
  ssb Vibrio cholerae strain A1552

32.955

100

0.372
  ssb Neisseria gonorrhoeae MS11

32.948

100

0.365

Multiple sequence alignment