Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DV311_RS08815 Genome accession   NZ_CP031253
Coordinates   1615185..1616681 (-) Length   498 a.a.
NCBI ID   WP_114935732.1    Uniprot ID   -
Organism   Neisseria lactamica strain M17106     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1610185..1621681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV311_RS08780 - 1610413..1611561 (+) 1149 WP_162817151.1 class I SAM-dependent methyltransferase -
  DV311_RS08795 - 1612202..1612468 (-) 267 WP_228777355.1 hypothetical protein -
  DV311_RS08800 - 1612703..1613524 (-) 822 WP_003709929.1 undecaprenyl-diphosphate phosphatase -
  DV311_RS08805 dsbA1 1613558..1614202 (-) 645 WP_003709928.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  DV311_RS08810 ftsN 1614205..1615074 (-) 870 WP_171007432.1 cell division protein FtsN -
  DV311_RS08815 comM 1615185..1616681 (-) 1497 WP_114935732.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DV311_RS08820 - 1616695..1617015 (-) 321 WP_114935733.1 accessory factor UbiK family protein -
  DV311_RS08835 putP 1617495..1619021 (+) 1527 WP_114935734.1 sodium/proline symporter PutP -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53522.54 Da        Isoelectric Point: 6.7790

>NTDB_id=305066 DV311_RS08815 WP_114935732.1 1615185..1616681(-) (comM) [Neisseria lactamica strain M17106]
MSLALVYSRALSGMNAPLVEVEAHLANGLPHFNIVGLPDTEVKESRDRVRAAIIQSGFEFPAKKITVNLAPADLPKESGR
FDLPIAIGILAASGQVAPEKLAEYEFAGELALSGLLRPVRGALAMAWQGMQAKRAFVLPEENAGQAAVMRGITVYGARSL
GEVAAHLNGIEPLAQTECSVPQMPSEHGEQPDLCDVKGQHTARLALEIAAAGGHSLLMMGPPGTGKSMLSQRLPGILPPL
TEDELVEVWALRSLLPNHQQQLDSNRPFRSPHHSASAAAMVGGGSDPRPGEISLAHHGVLFLDELPEFDRKVLEVLREPL
ENGEIHISRAARQAVYPAKFQLVAAMNPCPCGYLGHPVKPCRCTTESVARYRSKISGPLLDRIDLTIEVPSLSAAELMQQ
EAGESSANVLERVIAARDKQYARQGKVNAALSVGELETIARIQKEAQEALGGLLEKLSLSARSFHRIMRVARTLADLAGD
EEVGRSHVLKAIGFRRAL

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=305066 DV311_RS08815 WP_114935732.1 1615185..1616681(-) (comM) [Neisseria lactamica strain M17106]
ATGTCGCTCGCCTTGGTTTACAGCCGCGCCTTGAGCGGTATGAATGCGCCGTTGGTCGAAGTGGAAGCCCACCTTGCCAA
CGGCCTGCCGCATTTCAACATCGTCGGACTGCCCGATACGGAAGTCAAAGAAAGCCGCGACCGCGTCCGTGCCGCCATCA
TCCAAAGCGGCTTCGAGTTTCCCGCCAAAAAAATCACCGTCAATCTCGCCCCCGCCGACCTGCCCAAAGAGTCGGGGCGT
TTCGATTTGCCGATTGCAATCGGCATCCTTGCCGCATCGGGGCAGGTTGCGCCCGAAAAGCTGGCGGAATACGAGTTTGC
GGGGGAATTGGCACTGTCGGGGCTGTTGCGCCCCGTGCGCGGCGCGTTGGCGATGGCGTGGCAGGGTATGCAGGCAAAAC
GTGCATTTGTTTTGCCTGAAGAAAACGCAGGACAAGCCGCCGTGATGCGCGGCATTACCGTTTACGGCGCGCGCTCTTTG
GGCGAAGTCGCCGCCCATTTGAACGGCATCGAACCTTTGGCGCAAACCGAATGTTCCGTACCGCAAATGCCGTCTGAACA
TGGCGAACAACCTGATTTGTGTGATGTGAAAGGTCAGCACACTGCCCGCCTTGCTTTGGAAATCGCTGCCGCAGGCGGAC
ACAGCCTTTTGATGATGGGTCCGCCGGGAACGGGCAAGTCTATGCTCTCCCAACGGCTGCCCGGCATCCTGCCGCCGCTG
ACCGAAGACGAATTGGTCGAAGTTTGGGCATTGCGTTCGCTCCTTCCCAACCACCAGCAACAACTCGACAGCAACCGTCC
TTTCCGCAGTCCGCACCACAGCGCCAGCGCGGCGGCTATGGTCGGAGGCGGTTCGGACCCGCGTCCGGGCGAGATTTCAT
TGGCGCATCACGGCGTTTTGTTTTTGGACGAATTGCCCGAGTTCGACCGCAAAGTTTTGGAAGTGCTGCGCGAACCTTTG
GAAAACGGCGAAATCCACATTTCCCGCGCGGCGCGCCAAGCCGTCTATCCCGCCAAATTCCAGCTTGTCGCCGCCATGAA
CCCGTGTCCGTGCGGTTATCTCGGGCATCCCGTCAAACCCTGCCGTTGCACGACCGAAAGCGTCGCGCGTTACCGCAGCA
AAATTTCCGGCCCGCTGCTTGACCGCATCGATTTGACCATCGAAGTCCCCAGCCTGTCCGCCGCCGAACTGATGCAGCAG
GAAGCAGGGGAAAGCAGTGCAAACGTTTTGGAACGCGTCATCGCCGCCCGTGACAAACAATACGCACGGCAGGGCAAAGT
CAACGCCGCCTTGAGTGTCGGCGAACTCGAGACCATCGCACGCATCCAAAAAGAAGCGCAGGAAGCCTTGGGCGGATTGT
TGGAAAAACTCTCCCTCTCCGCCCGCAGCTTCCACCGCATCATGCGCGTGGCGCGTACGTTGGCGGATTTGGCAGGCGAC
GAAGAAGTCGGCAGAAGCCATGTTTTGAAAGCCATAGGTTTCCGTCGCGCTTTATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-396)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.187

100

0.536
  comM Vibrio campbellii strain DS40M4

52.314

99.799

0.522
  comM Haemophilus influenzae Rd KW20

50.2

100

0.504
  comM Glaesserella parasuis strain SC1401

48.81

100

0.494
  comM Legionella pneumophila str. Paris

46.733

100

0.474
  comM Legionella pneumophila strain ERS1305867

46.733

100

0.474
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.141

100

0.436

Multiple sequence alignment