Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   DV311_RS08805 Genome accession   NZ_CP031253
Coordinates   1613558..1614202 (-) Length   214 a.a.
NCBI ID   WP_003709928.1    Uniprot ID   E4ZBH0
Organism   Neisseria lactamica strain M17106     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1608558..1619202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV311_RS08770 rsmH 1608653..1609612 (-) 960 WP_114935730.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  DV311_RS08775 mraZ 1609609..1610064 (-) 456 WP_003709938.1 division/cell wall cluster transcriptional repressor MraZ -
  DV311_RS08780 - 1610413..1611561 (+) 1149 WP_162817151.1 class I SAM-dependent methyltransferase -
  DV311_RS08795 - 1612202..1612468 (-) 267 WP_228777355.1 hypothetical protein -
  DV311_RS08800 - 1612703..1613524 (-) 822 WP_003709929.1 undecaprenyl-diphosphate phosphatase -
  DV311_RS08805 dsbA1 1613558..1614202 (-) 645 WP_003709928.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  DV311_RS08810 ftsN 1614205..1615074 (-) 870 WP_171007432.1 cell division protein FtsN -
  DV311_RS08815 comM 1615185..1616681 (-) 1497 WP_114935732.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DV311_RS08820 - 1616695..1617015 (-) 321 WP_114935733.1 accessory factor UbiK family protein -
  DV311_RS08835 putP 1617495..1619021 (+) 1527 WP_114935734.1 sodium/proline symporter PutP -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23814.80 Da        Isoelectric Point: 9.7107

>NTDB_id=305065 DV311_RS08805 WP_003709928.1 1613558..1614202(-) (dsbA1) [Neisseria lactamica strain M17106]
MKLKHLLPLLLSAVLSAQAYALTEGEDYIVLDKPVPQQQSGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTEH
VVWRPEMLGLARMAAAVNLSGLKYQANPAVFKAVYEQKVHLEDRAVAGKWALSQKGFDGKKLMRAYDSPEAAAAALKMQK
LTEQYGIDSTPTVIVGGKYRVIFNNGFDGGIHTIKELLAKVRAERKLSNHPVQK

Nucleotide


Download         Length: 645 bp        

>NTDB_id=305065 DV311_RS08805 WP_003709928.1 1613558..1614202(-) (dsbA1) [Neisseria lactamica strain M17106]
ATGAAGCTCAAACATCTGTTGCCGCTGCTGCTGTCGGCAGTGTTGTCCGCACAGGCATATGCCCTGACGGAAGGGGAAGA
CTATATTGTTTTGGATAAGCCTGTCCCGCAGCAACAATCGGGAAAAATCGAAGTTTTGGAATTTTTCGGCTATTTTTGCG
TACATTGCCATCATTTCGACCCCTTGTTATTGAAGCTGGGCAAGGCATTGCCGTCTGATGCCTATTTGAGGACGGAACAC
GTGGTTTGGCGGCCTGAAATGCTCGGATTGGCCAGAATGGCGGCCGCCGTCAATTTGTCAGGTTTGAAATATCAGGCAAA
CCCTGCCGTGTTTAAAGCAGTTTACGAACAGAAGGTTCATTTGGAAGACAGGGCGGTGGCCGGAAAATGGGCTTTGTCGC
AAAAAGGCTTTGACGGCAAAAAACTGATGCGCGCCTATGATTCCCCCGAAGCTGCCGCCGCCGCATTAAAAATGCAGAAA
CTGACGGAACAATATGGTATTGACAGCACACCAACCGTTATTGTCGGTGGGAAATATCGCGTCATCTTCAATAATGGCTT
TGATGGCGGAATCCATACCATTAAAGAATTGCTTGCCAAAGTCAGGGCGGAGCGCAAACTGTCAAACCATCCTGTGCAAA
AATAA

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(42-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E4ZBH0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

55.08

87.383

0.481
  dsbA2 Neisseria meningitidis MC58

50.811

86.449

0.439

Multiple sequence alignment