Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilI   Type   Machinery gene
Locus tag   DV311_RS03325 Genome accession   NZ_CP031253
Coordinates   579686..580297 (+) Length   203 a.a.
NCBI ID   WP_114936060.1    Uniprot ID   -
Organism   Neisseria lactamica strain M17106     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 574686..585297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV311_RS03295 - 576075..576224 (-) 150 Protein_573 sulfate ABC transporter ATP-binding protein -
  DV311_RS03300 - 576290..576622 (+) 333 WP_114935174.1 general secretion pathway protein GspG -
  DV311_RS03305 - 576687..577268 (-) 582 WP_114935175.1 superoxide dismutase -
  DV311_RS03315 dnaB 577434..578846 (+) 1413 WP_114935176.1 replicative DNA helicase -
  DV311_RS03320 pilH 578991..579656 (+) 666 WP_114935177.1 GspH/FimT family pseudopilin Machinery gene
  DV311_RS03325 pilI 579686..580297 (+) 612 WP_114936060.1 type IV pilus modification protein PilV Machinery gene
  DV311_RS03330 pilJ 580294..581235 (+) 942 WP_013449151.1 PilW family protein Machinery gene
  DV311_RS03335 pilK 581214..581810 (+) 597 WP_003707450.1 pilus assembly PilX family protein Machinery gene
  DV311_RS03340 pilL 581812..582285 (+) 474 WP_025457170.1 PilX family type IV pilin Machinery gene
  DV311_RS03345 - 582355..582663 (-) 309 WP_003707454.1 AzlD family protein -
  DV311_RS03350 - 582660..583370 (-) 711 WP_114936061.1 AzlC family ABC transporter permease -
  DV311_RS03355 dut 583515..583967 (+) 453 WP_114935178.1 dUTP diphosphatase -
  DV311_RS03360 dapC 584045..585232 (+) 1188 WP_114935179.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22009.78 Da        Isoelectric Point: 4.7984

>NTDB_id=305051 DV311_RS03325 WP_114936060.1 579686..580297(+) (pilI) [Neisseria lactamica strain M17106]
MKNNDCFRLKNPQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVSQITQNLMEGMLMNPTIDSDSNKKN
YNLYTGSYTPSSSDGDFTLNNLKTKKDLAKAQLDRFGYELKNALPDAAAIHYAVCKDSSGNAPTLSDSGVFSSNCDNKAN
GDTLIKVLWVNDSAGDSDIARTNLEANGDNIVYTYQARVGGRE

Nucleotide


Download         Length: 612 bp        

>NTDB_id=305051 DV311_RS03325 WP_114936060.1 579686..580297(+) (pilI) [Neisseria lactamica strain M17106]
ATGAAGAATAATGATTGCTTCCGCCTGAAAAATCCCCAGTCCGGTATGGCGCTGATAGAAGTTTTGGTTGCTATGCTCGT
TCTGACCATCGGTATTTTGGCATTGCTGTCCGTGCAGTTGCGGACGGTCGCTTCCGTCAGGGAGGCAGAAACGCAAACCA
TCGTCAGCCAAATCACGCAAAACCTGATGGAAGGGATGTTGATGAATCCGACCATTGATTCGGACAGCAACAAGAAAAAC
TATAATCTTTACACAGGGTCGTACACCCCTTCTTCCTCCGATGGCGATTTCACGCTTAATAATTTGAAAACCAAGAAGGA
TTTGGCAAAAGCCCAGTTGGACAGGTTCGGTTATGAATTGAAAAATGCCTTGCCGGATGCGGCAGCTATTCATTACGCCG
TCTGCAAAGATTCGTCGGGTAATGCGCCGACATTGTCCGACAGCGGTGTTTTTTCTTCAAATTGCGACAATAAGGCAAAC
GGAGATACTTTAATTAAAGTATTGTGGGTAAATGATTCGGCAGGGGATTCGGATATTGCCCGTACGAATCTTGAAGCGAA
CGGCGACAATATCGTATATACCTATCAGGCAAGGGTCGGAGGTCGGGAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilI Neisseria gonorrhoeae MS11

89.655

100

0.897
  pilV Neisseria gonorrhoeae MS11

89.655

100

0.897
  pilV Neisseria meningitidis 8013

86.957

100

0.887

Multiple sequence alignment