Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EXA09_RS05590 Genome accession   NZ_CP035812
Coordinates   1205600..1206073 (-) Length   157 a.a.
NCBI ID   WP_001296921.1    Uniprot ID   -
Organism   Escherichia coli strain B7A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1200600..1211073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXA09_RS25970 rhuM 1201170..1201331 (-) 162 Protein_1081 RhuM family protein -
  EXA09_RS05560 - 1201654..1202151 (-) 498 WP_306305169.1 DUF2441 domain-containing protein -
  EXA09_RS05565 - 1202663..1203394 (-) 732 WP_001216640.1 retron system putative HNH endonuclease -
  EXA09_RS05570 - 1203391..1203612 (-) 222 WP_126125326.1 hypothetical protein -
  EXA09_RS05575 - 1203597..1204788 (-) 1192 Protein_1085 AAA family ATPase -
  EXA09_RS05580 - 1204926..1205234 (-) 309 Protein_1086 TA system toxin CbtA family protein -
  EXA09_RS05585 - 1205265..1205600 (-) 336 WP_001296928.1 type IV toxin-antitoxin system YeeU family antitoxin -
  EXA09_RS05590 radC 1205600..1206073 (-) 474 WP_001296921.1 DNA repair protein RadC Machinery gene
  EXA09_RS05595 - 1206103..1206921 (-) 819 WP_001296926.1 DUF932 domain-containing protein -
  EXA09_RS05600 - 1207158..1208111 (-) 954 WP_000290409.1 hypothetical protein -
  EXA09_RS05605 - 1208704..1209318 (+) 615 WP_000772911.1 inovirus Gp2 family protein -
  EXA09_RS05610 - 1209436..1209654 (+) 219 WP_001064742.1 AlpA family transcriptional regulator -
  EXA09_RS05615 - 1209869..1210654 (-) 786 WP_000766854.1 hypothetical protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17908.62 Da        Isoelectric Point: 7.5733

>NTDB_id=305054 EXA09_RS05590 WP_001296921.1 1205600..1206073(-) (radC) [Escherichia coli strain B7A]
MSELMLTPVFSVSEQRVIRRAMRLLEKYQRNPGESFLSSDATKTWLQLHLARQEREMFVVLYLDNQNRLLEHETLFLGTI
NSTEVHPREIVKSALRHNAAAVILAHNHPSGVAEPSRADRLITTNIVKTLDLVNVRVLDHFIIGAGDVLSFAERGWL

Nucleotide


Download         Length: 474 bp        

>NTDB_id=305054 EXA09_RS05590 WP_001296921.1 1205600..1206073(-) (radC) [Escherichia coli strain B7A]
ATGTCTGAACTGATGCTAACACCGGTATTTTCGGTGAGTGAACAACGCGTTATCCGCCGTGCGATGCGTCTGCTGGAGAA
ATATCAACGAAATCCTGGCGAATCTTTTCTTTCCTCTGACGCCACAAAAACCTGGCTGCAACTGCATCTGGCACGACAGG
AGCGGGAAATGTTTGTTGTGCTCTACCTCGATAACCAGAACCGACTGCTGGAACACGAAACGCTATTTCTCGGCACGATT
AACAGCACGGAAGTACATCCCCGTGAGATTGTGAAATCTGCGCTACGGCACAATGCCGCAGCAGTGATCCTTGCGCATAA
CCATCCCTCCGGTGTGGCGGAACCCAGTCGGGCCGACAGGCTTATTACAACGAATATTGTTAAGACACTGGATTTGGTGA
ATGTGAGGGTACTGGATCATTTCATTATTGGGGCGGGGGATGTCCTCTCTTTTGCCGAACGGGGCTGGCTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.085

75.159

0.414

Multiple sequence alignment