Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   DV311_RS03340 Genome accession   NZ_CP031253
Coordinates   581812..582285 (+) Length   157 a.a.
NCBI ID   WP_025457170.1    Uniprot ID   -
Organism   Neisseria lactamica strain M17106     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 576812..587285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV311_RS03315 dnaB 577434..578846 (+) 1413 WP_114935176.1 replicative DNA helicase -
  DV311_RS03320 pilH 578991..579656 (+) 666 WP_114935177.1 GspH/FimT family pseudopilin Machinery gene
  DV311_RS03325 pilI 579686..580297 (+) 612 WP_114936060.1 type IV pilus modification protein PilV Machinery gene
  DV311_RS03330 pilJ 580294..581235 (+) 942 WP_013449151.1 PilW family protein Machinery gene
  DV311_RS03335 pilK 581214..581810 (+) 597 WP_003707450.1 pilus assembly PilX family protein Machinery gene
  DV311_RS03340 pilL 581812..582285 (+) 474 WP_025457170.1 PilX family type IV pilin Machinery gene
  DV311_RS03345 - 582355..582663 (-) 309 WP_003707454.1 AzlD family protein -
  DV311_RS03350 - 582660..583370 (-) 711 WP_114936061.1 AzlC family ABC transporter permease -
  DV311_RS03355 dut 583515..583967 (+) 453 WP_114935178.1 dUTP diphosphatase -
  DV311_RS03360 dapC 584045..585232 (+) 1188 WP_114935179.1 succinyldiaminopimelate transaminase -
  DV311_RS03365 yaaA 585496..586275 (+) 780 WP_003707461.1 peroxide stress protein YaaA -
  DV311_RS03385 - 586942..587244 (-) 303 WP_025457165.1 hypothetical protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17286.82 Da        Isoelectric Point: 9.1760

>NTDB_id=305054 DV311_RS03340 WP_025457170.1 581812..582285(+) (pilL) [Neisseria lactamica strain M17106]
MEQKGFTLVEVMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVSINNAFKQIILKNPGESNQNLETELKKFAPAYRM
NPKIAEKYSVSGEFVDAAKSRAYRLVGVPKAGTGYTLSVWMNSVGDGYKCRDAASARAYSETLSADAGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=305054 DV311_RS03340 WP_025457170.1 581812..582285(+) (pilL) [Neisseria lactamica strain M17106]
ATGGAGCAAAAAGGGTTTACATTGGTTGAGGTAATGATAGTCGTCGCGATACTCGGCATCATCAGCGTCATTGCCATACC
TTCTTATCAAAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACAGAGATGGTCAGTATCAACAATGCTTTCAAAC
AGATTATTTTGAAAAATCCCGGGGAAAGTAATCAAAACCTTGAAACGGAACTGAAGAAGTTTGCGCCGGCTTATCGGATG
AACCCGAAAATTGCCGAAAAATATAGTGTTTCGGGGGAATTTGTCGATGCGGCAAAATCAAGGGCATACAGGTTGGTCGG
CGTTCCGAAGGCGGGGACGGGTTATACCTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCG
CTTCTGCCCGAGCCTATTCGGAGACTTTGTCCGCGGATGCCGGCTGTGAAGCTTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

79.618

100

0.796
  pilX Neisseria meningitidis 8013

78.981

100

0.79

Multiple sequence alignment