Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   DV311_RS03320 Genome accession   NZ_CP031253
Coordinates   578991..579656 (+) Length   221 a.a.
NCBI ID   WP_114935177.1    Uniprot ID   -
Organism   Neisseria lactamica strain M17106     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 573991..584656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV311_RS03290 ilvA 574493..576019 (+) 1527 WP_114935173.1 threonine ammonia-lyase, biosynthetic -
  DV311_RS03295 - 576075..576224 (-) 150 Protein_573 sulfate ABC transporter ATP-binding protein -
  DV311_RS03300 - 576290..576622 (+) 333 WP_114935174.1 general secretion pathway protein GspG -
  DV311_RS03305 - 576687..577268 (-) 582 WP_114935175.1 superoxide dismutase -
  DV311_RS03315 dnaB 577434..578846 (+) 1413 WP_114935176.1 replicative DNA helicase -
  DV311_RS03320 pilH 578991..579656 (+) 666 WP_114935177.1 GspH/FimT family pseudopilin Machinery gene
  DV311_RS03325 pilI 579686..580297 (+) 612 WP_114936060.1 type IV pilus modification protein PilV Machinery gene
  DV311_RS03330 pilJ 580294..581235 (+) 942 WP_013449151.1 PilW family protein Machinery gene
  DV311_RS03335 pilK 581214..581810 (+) 597 WP_003707450.1 pilus assembly PilX family protein Machinery gene
  DV311_RS03340 pilL 581812..582285 (+) 474 WP_025457170.1 PilX family type IV pilin Machinery gene
  DV311_RS03345 - 582355..582663 (-) 309 WP_003707454.1 AzlD family protein -
  DV311_RS03350 - 582660..583370 (-) 711 WP_114936061.1 AzlC family ABC transporter permease -
  DV311_RS03355 dut 583515..583967 (+) 453 WP_114935178.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24412.84 Da        Isoelectric Point: 8.8959

>NTDB_id=305050 DV311_RS03320 WP_114935177.1 578991..579656(+) (pilH) [Neisseria lactamica strain M17106]
MCTRKQQGFTLIELLIVMVIAAIMAMIALPSMSRWIASRRIASRAEQVANLLRFSRGEAVRLNLPVYICPVQVKKDGTVN
NQCDFSKKGQGMLAFGDKNGNKAYDGDAADVFLRSVVLNDADDSRINYAFNHIAFGQTQPTADRVVWTFNQNGAFGYSSD
QNLTRTSGFVYSDGYIQIVLTDAKAVSADEKKFRSAVVLIDGSGRVEVCPRNDTRAVCQHQ

Nucleotide


Download         Length: 666 bp        

>NTDB_id=305050 DV311_RS03320 WP_114935177.1 578991..579656(+) (pilH) [Neisseria lactamica strain M17106]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAATAGAGCTGCTCATCGTGATGGTCATCGCAGCCATTATGGCGATGAT
AGCCCTCCCCAGTATGAGCCGGTGGATTGCATCCCGCCGCATCGCCAGTCGCGCGGAGCAGGTTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTACGGTCAAC
AACCAATGCGACTTCAGTAAGAAGGGGCAGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGCATATGACGGCGA
TGCTGCGGATGTTTTTCTCCGCAGCGTGGTGTTGAATGATGCCGACGACAGCCGGATTAATTATGCTTTCAACCATATCG
CTTTCGGTCAAACACAGCCGACTGCCGACCGTGTTGTTTGGACTTTCAACCAAAACGGGGCATTCGGCTATTCGTCCGAT
CAGAATCTCACGCGCACTTCCGGATTTGTTTACTCTGACGGTTATATCCAAATCGTGTTGACAGATGCGAAGGCGGTTTC
TGCCGATGAAAAGAAATTCCGTTCGGCAGTGGTTTTGATTGACGGCAGCGGCAGGGTTGAGGTTTGTCCTAGAAACGATA
CGCGCGCCGTATGCCAACATCAATGA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(45-179)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

85.455

99.548

0.851

Multiple sequence alignment