Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   DV311_RS03330 Genome accession   NZ_CP031253
Coordinates   580294..581235 (+) Length   313 a.a.
NCBI ID   WP_013449151.1    Uniprot ID   E4ZDY6
Organism   Neisseria lactamica strain M17106     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 575294..586235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV311_RS03295 - 576075..576224 (-) 150 Protein_573 sulfate ABC transporter ATP-binding protein -
  DV311_RS03300 - 576290..576622 (+) 333 WP_114935174.1 general secretion pathway protein GspG -
  DV311_RS03305 - 576687..577268 (-) 582 WP_114935175.1 superoxide dismutase -
  DV311_RS03315 dnaB 577434..578846 (+) 1413 WP_114935176.1 replicative DNA helicase -
  DV311_RS03320 pilH 578991..579656 (+) 666 WP_114935177.1 GspH/FimT family pseudopilin Machinery gene
  DV311_RS03325 pilI 579686..580297 (+) 612 WP_114936060.1 type IV pilus modification protein PilV Machinery gene
  DV311_RS03330 pilJ 580294..581235 (+) 942 WP_013449151.1 PilW family protein Machinery gene
  DV311_RS03335 pilK 581214..581810 (+) 597 WP_003707450.1 pilus assembly PilX family protein Machinery gene
  DV311_RS03340 pilL 581812..582285 (+) 474 WP_025457170.1 PilX family type IV pilin Machinery gene
  DV311_RS03345 - 582355..582663 (-) 309 WP_003707454.1 AzlD family protein -
  DV311_RS03350 - 582660..583370 (-) 711 WP_114936061.1 AzlC family ABC transporter permease -
  DV311_RS03355 dut 583515..583967 (+) 453 WP_114935178.1 dUTP diphosphatase -
  DV311_RS03360 dapC 584045..585232 (+) 1188 WP_114935179.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 33981.48 Da        Isoelectric Point: 8.4293

>NTDB_id=305052 DV311_RS03330 WP_013449151.1 580294..581235(+) (pilJ) [Neisseria lactamica strain M17106]
MKRKMLNVPKGSYDGMKGFTIVEFLVAGLLSMIVLMAVGSSYFTSRKLNDAANERLAAQQDLRNAATLIVRDARMAGGFG
CFNMSEHPATDVISDTTQQNSPFSLKRNGIDKLIPIAESSNIGYPGFTQSGKALIFQYGIDDANASAATTVVSSCAAISK
PGKQILTLENVKKELKIPDTDNRQNGNIARQRHEVNAYAVGKIADEEGLFRFQLNANGGWGNPQLLVKKITHMNVRYVYV
SDCPEDEDAGKEEKFKYTDKFDSSKGAVTPAGVEVLLNSGTDTKIAASSDNNIYAYRIDATIRGGNVCANRTL

Nucleotide


Download         Length: 942 bp        

>NTDB_id=305052 DV311_RS03330 WP_013449151.1 580294..581235(+) (pilJ) [Neisseria lactamica strain M17106]
ATGAAACGTAAAATGCTAAACGTACCAAAAGGCAGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
AGGTCTGCTCAGTATGATTGTCCTGATGGCGGTCGGATCGAGTTACTTTACGTCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCGCGCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCGAGAATGGCGGGCGGCTTCGGT
TGTTTCAATATGTCCGAGCATCCTGCAACTGATGTTATTTCCGATACGACGCAACAAAATTCTCCTTTTTCCTTAAAAAG
GAACGGTATAGATAAACTTATTCCCATAGCGGAATCTTCAAATATCGGATATCCGGGTTTTACCCAGTCCGGTAAGGCAT
TGATTTTCCAATACGGTATCGATGATGCTAATGCAAGTGCCGCGACTACCGTCGTCAGCAGCTGTGCCGCAATATCGAAA
CCGGGCAAGCAAATCCTTACTTTAGAAAATGTAAAAAAAGAATTGAAGATTCCGGATACGGATAACAGGCAAAATGGCAA
TATTGCGCGTCAAAGGCATGAGGTCAATGCCTATGCGGTCGGCAAGATTGCCGATGAGGAAGGTTTGTTCCGCTTCCAAT
TGAATGCTAATGGCGGATGGGGTAATCCTCAGTTGCTCGTGAAAAAAATTACCCATATGAATGTGCGGTATGTCTATGTT
TCCGACTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAAAAATTCAAATATACGGATAAATTCGACAGTTCCAAAGGTGC
TGTTACGCCTGCCGGGGTGGAAGTTTTATTGAATAGCGGTACTGATACCAAGATTGCCGCTTCTTCAGACAATAATATTT
ATGCTTACCGTATCGATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACACTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E4ZDY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

79.747

100

0.805

Multiple sequence alignment