Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   DV311_RS01170 Genome accession   NZ_CP031253
Coordinates   201720..203897 (-) Length   725 a.a.
NCBI ID   WP_114934993.1    Uniprot ID   -
Organism   Neisseria lactamica strain M17106     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 196720..208897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV311_RS01130 - 197071..198018 (+) 948 WP_041422537.1 IS110 family transposase -
  DV311_RS01145 aroB 198481..199560 (-) 1080 WP_114934992.1 3-dehydroquinate synthase -
  DV311_RS01155 - 199645..200157 (-) 513 WP_003714369.1 shikimate kinase -
  DV311_RS01170 pilQ 201720..203897 (-) 2178 WP_114934993.1 type IV pilus secretin PilQ Machinery gene
  DV311_RS01175 pilP 203915..204460 (-) 546 WP_096108043.1 pilus assembly protein PilP Machinery gene
  DV311_RS01180 - 204478..205140 (-) 663 WP_096108041.1 type 4a pilus biogenesis protein PilO -
  DV311_RS01185 pilN 205141..205740 (-) 600 WP_003710236.1 PilN domain-containing protein Machinery gene
  DV311_RS01190 pilM 205743..206858 (-) 1116 WP_003710234.1 type IV pilus biogenesis protein PilM -

Sequence

Protein


Download         Length: 725 a.a.        Molecular weight: 78372.31 Da        Isoelectric Point: 9.9086

>NTDB_id=305039 DV311_RS01170 WP_114934993.1 201720..203897(-) (pilQ) [Neisseria lactamica strain M17106]
MNTKLTKIISGLFVATAAFQTASAGNITDIKVSSLPNKQKIVKVSFDKEVVNPTGFITSSPARIALDFEQTGISMNQQVL
EYADPLLGKISAAQNSSRARLVLNLNKPGQYNTEVRGNEVWILINESDDTVSAPARPVVKAAPAASAKQQAAAPFTESVV
SVSAPFTPSKQQAAAPAKQTNIDFRKDGKNAGIIELAALGFAGQPDISQQRDHIIVTLKNHTLPTALQRSLDVADFKTPV
QKVTLKRLNNDTQLIITTTGNWELVNKSAAPGYFTFQVLPKKQNLESGGVNNAPKTFKGRKISLDFQDVEVRTILQILAK
ESGMNIVASDSVNGKMTLSLKDVPWDQALDLVMQARNLDMRQQGNIVNIAPRDELLAKDKAFLQAEKDIADLGALYSQNF
QLKYKNVEEFRSILRLDNADTTGNRNTLISGRGSVLIDPATNTLIVTDTRSVIEKFRKLIDELDVPAQQVMIEARIVEAA
DGFSRDLGVKFGATGKKKLKDADRAFGWGVNSGFEGGDGGKWSAQTSINLPVAAAANSISLVRAISSGALNLELSASESL
SKTKTLANPRVLTQNRKEAKIESGTEIPFQDTSSSGGNSSTTTTFKKAVLGLTVTPNITPDGQIIMTVKINKDTPVDCTV
KDETTKCIQTKNLNTQAMVENGGTLIVGGIYEEENGNTLTKVPLLGDIPVIGNLFKTRGKSTNRRELLIFITPRIMDTAG
NNLRY

Nucleotide


Download         Length: 2178 bp        

>NTDB_id=305039 DV311_RS01170 WP_114934993.1 201720..203897(-) (pilQ) [Neisseria lactamica strain M17106]
ATGAATACCAAACTGACAAAAATCATTTCCGGCCTGTTTGTCGCAACCGCCGCCTTTCAGACGGCATCGGCAGGAAACAT
TACAGACATCAAAGTTTCCTCCCTGCCCAACAAACAGAAAATCGTCAAAGTCAGCTTTGACAAAGAGGTTGTCAACCCGA
CCGGCTTCATCACTTCGTCGCCCGCGCGCATCGCCTTGGACTTTGAACAAACCGGCATTTCCATGAATCAACAGGTACTC
GAGTATGCCGACCCTCTGTTGGGCAAAATCAGTGCCGCACAAAACAGCAGCCGTGCGCGTCTGGTTCTGAATCTGAACAA
ACCGGGTCAATACAATACCGAAGTACGCGGAAATGAAGTTTGGATTCTCATCAACGAATCGGACGATACCGTGTCCGCCC
CCGCCCGCCCCGTCGTAAAAGCCGCGCCTGCCGCGTCGGCAAAACAACAGGCTGCCGCACCGTTTACCGAGTCCGTAGTA
TCCGTATCCGCACCCTTTACCCCTTCAAAACAACAGGCGGCGGCACCGGCAAAACAAACCAATATCGATTTCCGCAAAGA
CGGCAAAAATGCCGGCATTATCGAATTGGCGGCATTGGGCTTTGCCGGGCAGCCCGACATCAGCCAACAACGCGACCACA
TCATCGTTACGCTGAAAAACCATACCCTGCCGACCGCGCTCCAACGCAGTTTGGATGTGGCAGACTTCAAAACACCGGTT
CAAAAGGTTACGCTGAAACGCCTCAATAACGACACCCAACTGATTATCACGACAACCGGCAACTGGGAACTCGTCAACAA
ATCCGCCGCGCCCGGATACTTTACCTTCCAAGTCCTGCCGAAAAAACAAAACCTCGAGTCAGGCGGCGTGAACAATGCGC
CCAAAACCTTCAAAGGCCGGAAAATCTCCCTTGACTTCCAAGATGTCGAAGTCCGCACCATCCTGCAGATTTTGGCCAAA
GAATCCGGAATGAATATTGTTGCCAGCGACTCCGTCAACGGCAAAATGACCCTCTCCCTCAAAGATGTGCCTTGGGATCA
GGCTTTGGATTTGGTTATGCAGGCGCGCAACCTCGATATGCGCCAGCAAGGGAACATCGTCAACATCGCGCCCCGCGACG
AGCTGCTTGCCAAAGACAAAGCCTTCTTACAGGCAGAAAAAGACATCGCCGATCTGGGCGCGCTGTATTCCCAAAACTTC
CAGTTGAAATACAAAAATGTGGAAGAATTCCGCAGCATCCTGCGTTTGGACAATGCCGACACGACCGGAAACCGCAACAC
GCTTATCAGCGGCAGGGGCAGCGTGCTGATCGATCCCGCCACCAACACCCTGATTGTTACCGACACCCGCAGCGTCATCG
AAAAATTCCGCAAACTGATCGACGAATTGGACGTACCCGCGCAACAAGTGATGATTGAGGCGCGCATCGTCGAAGCGGCA
GACGGCTTCTCGCGCGATTTGGGCGTTAAGTTCGGCGCGACAGGCAAGAAAAAGCTGAAAGATGCTGACCGCGCATTCGG
CTGGGGCGTGAACTCGGGTTTTGAAGGCGGCGACGGCGGCAAATGGTCTGCCCAAACCAGCATCAACCTGCCGGTTGCCG
CTGCCGCAAACAGCATTTCGCTGGTGCGCGCGATTTCCTCCGGCGCGTTGAATTTGGAATTGTCCGCATCCGAGTCGCTT
TCAAAAACCAAAACGCTTGCCAATCCGCGCGTGCTGACCCAAAACCGGAAAGAAGCCAAAATCGAATCCGGTACGGAAAT
CCCCTTCCAAGACACTTCAAGTTCGGGTGGCAACAGCAGCACGACCACAACCTTCAAAAAAGCCGTATTGGGGCTGACCG
TTACGCCGAACATCACGCCCGACGGGCAAATCATTATGACCGTCAAAATCAATAAAGACACACCTGTCGACTGTACCGTA
AAAGATGAGACGACCAAGTGTATCCAAACCAAAAACCTGAATACGCAGGCTATGGTTGAAAACGGCGGCACTTTGATTGT
CGGCGGTATTTATGAAGAAGAGAACGGCAATACGCTGACCAAAGTCCCCCTGTTGGGCGACATCCCCGTTATCGGCAACC
TCTTTAAAACACGAGGGAAAAGCACCAACCGCCGCGAACTGCTGATTTTCATTACCCCGAGGATTATGGATACGGCCGGC
AACAACCTGCGCTATTGA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(325-370)

Bacterial type II/III secretion system short domain (Secretin_N)

(398-469)

AMIN domain (AMIN)

(43-115)

Bacterial type II and III secretion system protein (Secretin)

(557-717)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Neisseria gonorrhoeae strain FA1090

92.69

100

0.927
  pilQ Neisseria meningitidis MC58

85.473

100

0.909
  pilQ Neisseria meningitidis M1080

85.976

100

0.905

Multiple sequence alignment