Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   DV311_RS01185 Genome accession   NZ_CP031253
Coordinates   205141..205740 (-) Length   199 a.a.
NCBI ID   WP_003710236.1    Uniprot ID   A0A1V0DT42
Organism   Neisseria lactamica strain M17106     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 200141..210740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV311_RS01170 pilQ 201720..203897 (-) 2178 WP_114934993.1 type IV pilus secretin PilQ Machinery gene
  DV311_RS01175 pilP 203915..204460 (-) 546 WP_096108043.1 pilus assembly protein PilP Machinery gene
  DV311_RS01180 - 204478..205140 (-) 663 WP_096108041.1 type 4a pilus biogenesis protein PilO -
  DV311_RS01185 pilN 205141..205740 (-) 600 WP_003710236.1 PilN domain-containing protein Machinery gene
  DV311_RS01190 pilM 205743..206858 (-) 1116 WP_003710234.1 type IV pilus biogenesis protein PilM -
  DV311_RS01195 - 207009..209405 (+) 2397 WP_114934994.1 penicillin-binding protein 1A -
  DV311_RS01200 yihA 209529..210152 (-) 624 WP_003710228.1 ribosome biogenesis GTP-binding protein YihA/YsxC -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22382.60 Da        Isoelectric Point: 9.1696

>NTDB_id=305041 DV311_RS01185 WP_003710236.1 205141..205740(-) (pilN) [Neisseria lactamica strain M17106]
MNNLIKINLLPYREEMNKRKQQQFKTLMYGAVLTGVAAVAATYLFIDNMINNQSERNTLLETSIAHLDTELSEIQKLKQE
KDAFLIKKNKIEELQLKRLQAAKILDSLNEAVPESTYLTSLDAVTADSYRLNGRTSSDNRVAAMMRAMPNTGIFKQPELL
SIKKNNSYQEFTLQATLQPIVKAAESKENPASGNAQEAN

Nucleotide


Download         Length: 600 bp        

>NTDB_id=305041 DV311_RS01185 WP_003710236.1 205141..205740(-) (pilN) [Neisseria lactamica strain M17106]
ATGAACAATTTAATCAAAATCAACCTCCTCCCCTACAGGGAAGAGATGAACAAGCGCAAACAGCAGCAGTTTAAAACGCT
GATGTACGGTGCCGTGCTGACGGGCGTTGCCGCCGTTGCGGCAACCTACCTGTTTATCGACAATATGATCAATAACCAGT
CGGAAAGAAACACGCTGCTGGAAACCTCCATCGCACACTTGGATACCGAGCTGTCGGAAATACAAAAGCTCAAACAGGAA
AAAGATGCCTTCCTGATTAAGAAAAACAAAATCGAGGAGCTCCAGCTCAAACGCCTCCAAGCCGCAAAAATCCTCGACAG
CCTGAATGAGGCCGTCCCCGAAAGCACCTACCTGACCTCGCTGGATGCCGTCACTGCCGACTCTTACCGGTTAAACGGCA
GGACATCCAGCGACAACCGCGTTGCCGCCATGATGAGGGCGATGCCCAATACCGGCATATTCAAGCAACCCGAATTGTTA
AGCATTAAGAAAAACAATTCGTATCAAGAATTTACCCTTCAGGCAACATTACAACCCATCGTAAAGGCGGCCGAATCCAA
AGAGAATCCGGCTTCGGGAAACGCACAGGAGGCAAACTGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(104-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V0DT42

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

98.492

100

0.985

Multiple sequence alignment