Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   DV311_RS01175 Genome accession   NZ_CP031253
Coordinates   203915..204460 (-) Length   181 a.a.
NCBI ID   WP_096108043.1    Uniprot ID   -
Organism   Neisseria lactamica strain M17106     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 198915..209460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV311_RS01155 - 199645..200157 (-) 513 WP_003714369.1 shikimate kinase -
  DV311_RS01170 pilQ 201720..203897 (-) 2178 WP_114934993.1 type IV pilus secretin PilQ Machinery gene
  DV311_RS01175 pilP 203915..204460 (-) 546 WP_096108043.1 pilus assembly protein PilP Machinery gene
  DV311_RS01180 - 204478..205140 (-) 663 WP_096108041.1 type 4a pilus biogenesis protein PilO -
  DV311_RS01185 pilN 205141..205740 (-) 600 WP_003710236.1 PilN domain-containing protein Machinery gene
  DV311_RS01190 pilM 205743..206858 (-) 1116 WP_003710234.1 type IV pilus biogenesis protein PilM -
  DV311_RS01195 - 207009..209405 (+) 2397 WP_114934994.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19617.00 Da        Isoelectric Point: 4.6583

>NTDB_id=305040 DV311_RS01175 WP_096108043.1 203915..204460(-) (pilP) [Neisseria lactamica strain M17106]
MKYYALFISLAALSACSQDSEDLNAWMAQTQQEAKAGIIPFQAPTLPVAPVYSPPQPTGPNAFDFHRMEAAKKGGNAPDT
KRIKEALEKFSLENIRYVGILKSGQKVSGFVEADGYVYTVGIGNYLGQNYGKIQSITDDSIVLNELIEDGTGNWVSRRAE
LPLNASDKNTEQAAAPAAEQN

Nucleotide


Download         Length: 546 bp        

>NTDB_id=305040 DV311_RS01175 WP_096108043.1 203915..204460(-) (pilP) [Neisseria lactamica strain M17106]
ATGAAATATTACGCCTTATTCATCAGTCTTGCCGCCCTATCCGCCTGTTCCCAAGATTCTGAAGACCTGAACGCGTGGAT
GGCTCAGACACAGCAAGAAGCCAAAGCAGGAATCATACCTTTCCAGGCTCCTACCCTGCCGGTCGCGCCGGTATACAGCC
CCCCTCAGCCGACGGGGCCCAACGCTTTCGATTTCCACCGGATGGAAGCCGCCAAAAAAGGGGGTAACGCCCCCGATACC
AAGCGTATTAAAGAAGCTCTGGAGAAATTCAGCCTGGAAAACATACGCTATGTCGGCATTTTGAAGTCCGGTCAGAAAGT
ATCCGGCTTCGTCGAAGCCGACGGCTATGTCTACACGGTCGGCATCGGCAACTATTTGGGGCAAAATTACGGTAAAATCC
AAAGCATTACCGACGACAGCATCGTTTTGAACGAATTAATCGAAGACGGTACGGGCAACTGGGTTTCCCGCAGGGCGGAA
CTGCCTCTGAACGCTTCCGACAAAAACACCGAACAAGCGGCAGCACCCGCCGCAGAACAAAATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

86.188

100

0.862

Multiple sequence alignment