Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGG/cglG   Type   Machinery gene
Locus tag   DV130_RS09270 Genome accession   NZ_CP031248
Coordinates   1727627..1728073 (+) Length   148 a.a.
NCBI ID   WP_050072685.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain M26365     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1722627..1733073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV130_RS09230 - 1722683..1723741 (+) 1059 WP_000649470.1 zinc-dependent alcohol dehydrogenase family protein -
  DV130_RS09235 - 1723892..1724257 (+) 366 WP_000286415.1 DUF1033 family protein -
  DV130_RS09240 comGA/cglA/cilD 1724333..1725274 (+) 942 WP_000249571.1 competence type IV pilus ATPase ComGA Machinery gene
  DV130_RS09245 comGB/cglB 1725222..1726238 (+) 1017 WP_078130847.1 competence type IV pilus assembly protein ComGB Machinery gene
  DV130_RS09250 comGC/cglC 1726240..1726563 (+) 324 WP_000738628.1 comG operon protein ComGC Machinery gene
  DV130_RS09255 comGD/cglD 1726526..1726960 (+) 435 WP_033606693.1 competence type IV pilus minor pilin ComGD Machinery gene
  DV130_RS09260 comGE/cglE 1726923..1727225 (+) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  DV130_RS09265 comGF/cglF 1727188..1727649 (+) 462 WP_050072687.1 competence type IV pilus minor pilin ComGF Machinery gene
  DV130_RS09270 comGG/cglG 1727627..1728073 (+) 447 WP_050072685.1 competence type IV pilus minor pilin ComGG Machinery gene
  DV130_RS09275 - 1728176..1728770 (+) 595 Protein_1759 methyltransferase domain-containing protein -
  DV130_RS09280 comYH 1728831..1729784 (+) 954 WP_050072683.1 class I SAM-dependent methyltransferase Machinery gene
  DV130_RS09285 - 1729835..1731025 (+) 1191 WP_000167769.1 acetate/propionate family kinase -
  DV130_RS12790 - 1731026..1731157 (+) 132 WP_000768904.1 hypothetical protein -
  DV130_RS09290 rnpA 1731174..1731545 (+) 372 WP_000739244.1 ribonuclease P protein component -
  DV130_RS09295 - 1731520..1732344 (+) 825 WP_201418501.1 membrane protein insertase YidC -

Sequence


Protein


Download         Length: 148 a.a.        Molecular weight: 17231.90 Da        Isoelectric Point: 10.4944

>NTDB_id=304870 DV130_RS09270 WP_050072685.1 1727627..1728073(+) (comGG/cglG) [Streptococcus pneumoniae strain M26365]
MWKKKKVKAGVLLYAVTMAAIFSLLLQFYLNRQVAHYQDYALNKEKLVAFAMAKRTKDKAEQESGEQVFNLGQVSYQNKK
TSLVTTVRTDKSQYEFLFPSVKIKEEKRDKKEEVATDSSEKAEKKNQKRGLKRKRIPSQFNYNALNPE

Nucleotide


Download         Length: 447 bp        

>NTDB_id=304870 DV130_RS09270 WP_050072685.1 1727627..1728073(+) (comGG/cglG) [Streptococcus pneumoniae strain M26365]
GTGTGGAAAAAGAAGAAAGTTAAGGCAGGTGTTCTCCTCTATGCAGTCACCATGGCAGCTATCTTTAGTCTTTTGTTGCA
ATTTTACTTGAACCGACAAGTCGCCCACTATCAAGACTATGCTTTGAATAAAGAAAAATTGGTTGCTTTTGCCATGGCTA
AACGAACCAAGGATAAAGCCGAGCAAGAAAGTGGGGAACAGGTCTTTAATCTAGGTCAGGTAAGCTATCAAAACAAGAAA
ACAAGCTTGGTGACGACTGTTCGTACGGATAAGAGTCAATATGAGTTTCTGTTTCCTTCAGTCAAAATCAAAGAAGAGAA
AAGAGATAAAAAGGAAGAGGTAGCGACCGATTCAAGCGAAAAAGCGGAGAAAAAAAATCAGAAGAGAGGCCTGAAAAGAA
AGAGAATTCCTAGTCAATTCAACTATAATGCGTTGAATCCAGAATAG

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus pneumoniae Rx1

95.726

79.054

0.757

  comGG/cglG Streptococcus pneumoniae D39

95.726

79.054

0.757

  comGG/cglG Streptococcus pneumoniae R6

95.726

79.054

0.757

  comGG/cglG Streptococcus pneumoniae TIGR4

95.726

79.054

0.757

  comGG/cglG Streptococcus mitis NCTC 12261

90.984

82.432

0.75

  comGG/cglG Streptococcus mitis SK321

86.066

82.432

0.709


Multiple sequence alignment