Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   DV130_RS09280 Genome accession   NZ_CP031248
Coordinates   1728831..1729784 (+) Length   317 a.a.
NCBI ID   WP_050072683.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain M26365     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1723831..1734784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV130_RS09235 - 1723892..1724257 (+) 366 WP_000286415.1 DUF1033 family protein -
  DV130_RS09240 comGA/cglA/cilD 1724333..1725274 (+) 942 WP_000249571.1 competence type IV pilus ATPase ComGA Machinery gene
  DV130_RS09245 comGB/cglB 1725222..1726238 (+) 1017 WP_078130847.1 competence type IV pilus assembly protein ComGB Machinery gene
  DV130_RS09250 comGC/cglC 1726240..1726563 (+) 324 WP_000738628.1 comG operon protein ComGC Machinery gene
  DV130_RS09255 comGD/cglD 1726526..1726960 (+) 435 WP_033606693.1 competence type IV pilus minor pilin ComGD Machinery gene
  DV130_RS09260 comGE/cglE 1726923..1727225 (+) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  DV130_RS09265 comGF/cglF 1727188..1727649 (+) 462 WP_050072687.1 competence type IV pilus minor pilin ComGF Machinery gene
  DV130_RS09270 comGG/cglG 1727627..1728073 (+) 447 WP_050072685.1 competence type IV pilus minor pilin ComGG Machinery gene
  DV130_RS09275 - 1728176..1728770 (+) 595 Protein_1759 methyltransferase domain-containing protein -
  DV130_RS09280 comYH 1728831..1729784 (+) 954 WP_050072683.1 class I SAM-dependent methyltransferase Machinery gene
  DV130_RS09285 - 1729835..1731025 (+) 1191 WP_000167769.1 acetate/propionate family kinase -
  DV130_RS12790 - 1731026..1731157 (+) 132 WP_000768904.1 hypothetical protein -
  DV130_RS09290 rnpA 1731174..1731545 (+) 372 WP_000739244.1 ribonuclease P protein component -
  DV130_RS09295 - 1731520..1732344 (+) 825 WP_201418501.1 membrane protein insertase YidC -
  DV130_RS09300 jag 1732363..1733349 (+) 987 WP_000260027.1 RNA-binding cell elongation regulator Jag/EloR -
  DV130_RS09305 - 1733400..1734023 (+) 624 WP_000932635.1 hypothetical protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35691.87 Da        Isoelectric Point: 4.2665

>NTDB_id=304871 DV130_RS09280 WP_050072683.1 1728831..1729784(+) (comYH) [Streptococcus pneumoniae strain M26365]
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELNQVKDNNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFKEEEITILEMGSGMGILGATFLTSLDKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQEHTYAHHLLMEQGFKYLKSDGYAIFLAPSDLLTSPQ
SDLLKVWLKEEASLVAMISLPENLFANAKQSKTIFILQKKSEIAVEPFVYPLASLQDASVLMKFKENFQKWTQGTEI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=304871 DV130_RS09280 WP_050072683.1 1728831..1729784(+) (comYH) [Streptococcus pneumoniae strain M26365]
ATGGATTTTGAAAAAATTGAACAAGCTTATACCTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTGGAGCAAAACAGCATCTATCTGGATGGTGAAACTGAGCTAAACCAGGTCAAAGACAACAATC
AGGCCCTTAAGCGTTTAGCACTACGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCTGGGCAAACA
GAACCCTTGCAGGCCAATCACCAGTTTACACCGGATGCTATTGCTTTGCTTTTGGTGTTTATTGTGGAAGAGTTGTTTAA
AGAGGAGGAAATTACTATCCTCGAAATGGGTTCTGGGATGGGAATTCTAGGCGCTACTTTCTTGACCTCGCTTGATAAAA
AGGTGGATTACTTAGGAATGGAAGTGGATGATTTACTGATTGATCTGGCAGCTAGCATGGCAGATGTAATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCCGTTCGTCCACAAATGCTCAAAGAAAGCGATGTGGTCATCAGTGACTTGCCTGTCGG
CTATTATCCTGATGATGCCGTTGCGTCGCGTCATCAAGTTGCTTCTAGCCAAGAACATACTTACGCCCATCACTTGCTCA
TGGAACAAGGGTTTAAGTACCTTAAGTCAGATGGATATGCTATTTTTCTAGCTCCGAGTGATTTGTTGACCAGTCCTCAA
AGTGATTTGTTGAAAGTCTGGTTGAAAGAGGAGGCAAGTCTGGTTGCTATGATTAGTTTACCTGAAAATCTCTTTGCTAA
TGCTAAACAATCTAAGACTATTTTTATCCTACAGAAGAAAAGTGAAATAGCAGTGGAGCCTTTTGTTTATCCACTTGCTA
GCTTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

54.633

98.738

0.539
  comYH Streptococcus mutans UA159

54.313

98.738

0.536

Multiple sequence alignment