Detailed information    

insolico Bioinformatically predicted

Overview

Name   micA   Type   Regulator
Locus tag   DV130_RS01555 Genome accession   NZ_CP031248
Coordinates   291913..292617 (+) Length   234 a.a.
NCBI ID   WP_000722076.1    Uniprot ID   Q9S1K0
Organism   Streptococcus pneumoniae strain M26365     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 286913..297617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV130_RS01535 coaC 287203..287754 (-) 552 WP_001284130.1 phosphopantothenoylcysteine decarboxylase -
  DV130_RS01540 coaB 287766..288455 (-) 690 WP_000699496.1 phosphopantothenate--cysteine ligase -
  DV130_RS01545 - 288685..290355 (+) 1671 WP_000845290.1 formate--tetrahydrofolate ligase -
  DV130_RS12720 - 290461..290586 (-) 126 WP_001818232.1 hypothetical protein -
  DV130_RS01550 mutY 290683..291858 (+) 1176 WP_000886145.1 A/G-specific adenine glycosylase -
  DV130_RS01555 micA 291913..292617 (+) 705 WP_000722076.1 response regulator YycF Regulator
  DV130_RS01560 micB 292610..293959 (+) 1350 WP_000886210.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DV130_RS01565 vicX 293961..294770 (+) 810 WP_001289493.1 MBL fold metallo-hydrolase Regulator
  DV130_RS01570 - 294861..295103 (+) 243 WP_000208080.1 DUF6290 family protein -
  DV130_RS01575 - 295105..295359 (+) 255 WP_001823540.1 type II toxin-antitoxin system RelE/ParE family toxin -
  DV130_RS01580 - 295406..296179 (+) 774 WP_050072391.1 ion channel -
  DV130_RS01585 - 296442..297428 (-) 987 WP_000204727.1 L-lactate dehydrogenase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26815.63 Da        Isoelectric Point: 4.7164

>NTDB_id=304825 DV130_RS01555 WP_000722076.1 291913..292617(+) (micA) [Streptococcus pneumoniae strain M26365]
MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLSA
KDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSQPMPVDGQEADSKPQPIQIGDLEIVPDAYVAKKYGEELDLT
HREFELLYHLASHTGQVITREHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMRNNA

Nucleotide


Download         Length: 705 bp        

>NTDB_id=304825 DV130_RS01555 WP_000722076.1 291913..292617(+) (micA) [Streptococcus pneumoniae strain M26365]
ATGAAAAAAATACTAATTGTAGATGATGAGAAACCAATCTCGGATATTATCAAGTTTAATATGACCAAGGAAGGTTACGA
AGTTGTAACTGCTTTTAATGGTCGTGAAGCGCTAGAGCAATTTGAAGCAGAGCAACCAGATATTATTATTCTGGATTTGA
TGCTTCCAGAAATTGATGGTTTAGAAGTTGCTAAGACCATTCGTAAGACAAGCAGTGTGCCCATTCTTATGCTTTCAGCC
AAAGATAGTGAATTTGATAAGGTTATCGGTTTGGAACTTGGGGCAGATGACTATGTAACGAAACCCTTCTCCAATCGTGA
GTTGCAGGCGCGTGTTAAAGCTCTTCTGCGTCGTTCTCAACCTATGCCAGTAGATGGTCAGGAAGCAGATAGTAAACCTC
AACCTATCCAAATTGGGGATTTAGAAATTGTTCCAGACGCCTACGTGGCTAAAAAATATGGCGAAGAACTAGACTTAACC
CATCGTGAATTTGAGCTTTTGTATCATTTAGCATCGCATACAGGTCAAGTCATCACGCGCGAACACTTGCTTGAGACTGT
CTGGGGTTATGACTATTTTGGTGATGTCCGCACAGTTGATGTGACTGTACGACGTCTGCGTGAGAAGATTGAAGATACGC
CCAGCCGACCAGAGTATATCTTGACGCGCCGTGGTGTAGGGTATTACATGAGAAATAATGCTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(154-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 1NXS
  PDB 2A9O
  PDB 2A9P

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micA Streptococcus pneumoniae Cp1015

100

100

1
  vicR Streptococcus mutans UA159

78.541

99.573

0.782
  covR Streptococcus salivarius strain HSISS4

44.156

98.718

0.436
  covR Lactococcus lactis subsp. lactis strain DGCC12653

43.478

98.291

0.427
  scnR Streptococcus mutans UA159

38.197

99.573

0.38

Multiple sequence alignment