Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   DV130_RS01565 Genome accession   NZ_CP031248
Coordinates   293961..294770 (+) Length   269 a.a.
NCBI ID   WP_001289493.1    Uniprot ID   Q9RCS5
Organism   Streptococcus pneumoniae strain M26365     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 288961..299770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV130_RS12720 - 290461..290586 (-) 126 WP_001818232.1 hypothetical protein -
  DV130_RS01550 mutY 290683..291858 (+) 1176 WP_000886145.1 A/G-specific adenine glycosylase -
  DV130_RS01555 micA 291913..292617 (+) 705 WP_000722076.1 response regulator YycF Regulator
  DV130_RS01560 micB 292610..293959 (+) 1350 WP_000886210.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DV130_RS01565 vicX 293961..294770 (+) 810 WP_001289493.1 MBL fold metallo-hydrolase Regulator
  DV130_RS01570 - 294861..295103 (+) 243 WP_000208080.1 DUF6290 family protein -
  DV130_RS01575 - 295105..295359 (+) 255 WP_001823540.1 type II toxin-antitoxin system RelE/ParE family toxin -
  DV130_RS01580 - 295406..296179 (+) 774 WP_050072391.1 ion channel -
  DV130_RS01585 - 296442..297428 (-) 987 WP_000204727.1 L-lactate dehydrogenase -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29916.89 Da        Isoelectric Point: 6.1743

>NTDB_id=304827 DV130_RS01565 WP_001289493.1 293961..294770(+) (vicX) [Streptococcus pneumoniae strain M26365]
MSEIGFKYSILASGSSGNSFYLETSKKKLLVDAGLSGKKITSLLAEINRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEKTWQAMENSKYLGKVDSSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRFMKDDKSFVLLTDTGYVSDRMAG
IVENADGYLIEANHDVEILRSGSYAWRLKQRILSDLGHLSNEDGAEAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVN
QLAQADLGVGVDFKVYDTSPDTATPLTEI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=304827 DV130_RS01565 WP_001289493.1 293961..294770(+) (vicX) [Streptococcus pneumoniae strain M26365]
ATGAGTGAAATAGGCTTTAAATACAGTATTTTAGCGTCGGGTTCCAGTGGAAATTCTTTTTATCTGGAAACCTCAAAAAA
GAAGCTTTTAGTGGATGCAGGCTTGTCTGGCAAGAAAATTACCAGTCTGCTAGCTGAAATTAACCGCAAGCCAGAAGACC
TGGATGCCATCTTGATTACCCATGAGCATTCAGATCATATCCATGGAGTAGGCGTTTTGGCTCGCAAGTATGGTATGGAT
CTTTATGCCAATGAAAAGACCTGGCAAGCTATGGAAAATAGTAAATATCTTGGCAAGGTGGATTCTTCGCAAAAGCATAT
TTTTGAAATGGGTAAAACCAAAACCTTTGGAGATATCGACATCGAGAGTTTTGGTGTAAGCCATGATGCAGTCGCACCGC
AGTTCTATCGCTTTATGAAGGATGATAAGAGTTTTGTCCTTTTGACAGATACAGGTTATGTCAGTGACCGTATGGCGGGC
ATTGTCGAAAATGCGGATGGCTATCTTATCGAGGCCAACCATGATGTAGAGATTTTGCGATCAGGTTCTTACGCTTGGCG
ACTCAAACAACGAATCCTATCTGACCTTGGTCACCTTTCTAACGAGGACGGTGCTGAAGCTATGATTCGGACGCTAGGAA
ATCGTACTAAGAAGATTTACCTTGGGCATTTATCTAAGGAAAATAATATCAAGGAACTGGCTCATATGACCATGGTCAAT
CAGCTGGCTCAAGCTGATCTGGGAGTCGGAGTAGACTTTAAGGTTTATGATACCTCACCAGATACCGCAACACCATTGAC
AGAGATATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9RCS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.323

100

0.773

Multiple sequence alignment